Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1332 |
Symbol | |
ID | 6087872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 1466769 |
End bp | 1468103 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641596396 |
Product | multidrug efflux system subunit MdtA |
Protein accession | YP_001720079 |
Protein GI | 170023574 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.713792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCTC AATCCAAACG CACTTCCCGA TTATTCGTAT TCGTGGGGGT AGTGGTGGCG ATCATTATTG CGGTGCTTAG TTGGCGCTAC TTTGGTACCG GCTCCGATAA CAATACGTCA GGTGCTCAGC AGAGTGCCCG TGGTCAGGAC ACTAGCCATG GTGGCCGCCG TAATACACCG CTGGCACCGG TGCAAGCCGC AACCGCAACC GAGCAGGAAG TGCCACGTTA TCTCACTGGC TTAGGGACGG TCATTGCCGC CAATACTGTC ACGGTAACCA GCCGAGTTGA TGGTGAATTG ATGGCCCTTC ATTTCACTGA AGGGCAGCAG GTTAAGGCTG GCGACTTACT GGCAGAGATC GACCCCCGCC CTTACGAAGT CCAACTGACG CAGGCTCAGG GGCAGTTGGC CAAAGATCAG GCCACGCTGG ATAACGCCCG TCGTGATCTG GCCCGTTATC AGAAATTGTC CAAAACTGGC CTGATTTCGC AACAGGAACT GGATACGCAA TCTTCGCTGG TACGCCAGAG CGAGGGCAGT GTGAAAGCCG ATCAGGGCGC TATCGACAGC GCCAAATTGC AACTGACGTA TAGCCGTATT ACCGCGCCTA TCTCCGGTAG AGTGGGCCTG AAACAAGTGG ATGTCGGCAA TTACATTACC AGCGGCACGG CCACACCGAT TGTGGTGATC ACCCAGACAC ATCCCGTTGA TGTGGTCTTT ACCCTGCCAG AAAGCGATAT TCCCGCCATT ATGCAAGCAC AGAAAAATGC GGAGAAGACT CACGCCATCG TGCCCGTTGA AGCGTGGGAT CGGACGAATA AACAGATGCT GGCACAGGGC TACCTGCTCA GTATTGATAA CCAGATTGAT ACCACGACGG GCACCATTAA ACTGAAAGCC CGCTTTAATA ATGAAGATGA TGTGCTGTTC CCTAATCAGT TTGTTAACGC CCGTATCAAG GTCGATTTGC TGCAAAATGC TGTCGTGGTG CCCACCGCAG CGGTACAAAT GGGCAGCGAA GGTAACTTTG TCTGGACGTT AGATGATGCA AATAAAGTCA GCAAACATCT GGTCACCACC GGGATTCAGA ATAGCCAACA AGTGGTTATC GACGCAGGCC TGAACGCTGG GCAACGCGTG GTCACGGATG GTATTGATCG CCTGACCGAG GGAGTACAGG TTGAAGTGGT GACACCACGC AGCGCCAATA CTGACACTAA TCCAGCCAGT GCAGAGAAAG CGGCTGCAGA AGCAGAAGGC AGCACCCCGC ATCAAGGCCG AGGGCGTCCG GCCAATGCGC CTGCACGTAG CACCACGGCT GCGGAGAAAT CCTGA
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Protein sequence | MKSQSKRTSR LFVFVGVVVA IIIAVLSWRY FGTGSDNNTS GAQQSARGQD TSHGGRRNTP LAPVQAATAT EQEVPRYLTG LGTVIAANTV TVTSRVDGEL MALHFTEGQQ VKAGDLLAEI DPRPYEVQLT QAQGQLAKDQ ATLDNARRDL ARYQKLSKTG LISQQELDTQ SSLVRQSEGS VKADQGAIDS AKLQLTYSRI TAPISGRVGL KQVDVGNYIT SGTATPIVVI TQTHPVDVVF TLPESDIPAI MQAQKNAEKT HAIVPVEAWD RTNKQMLAQG YLLSIDNQID TTTGTIKLKA RFNNEDDVLF PNQFVNARIK VDLLQNAVVV PTAAVQMGSE GNFVWTLDDA NKVSKHLVTT GIQNSQQVVI DAGLNAGQRV VTDGIDRLTE GVQVEVVTPR SANTDTNPAS AEKAAAEAEG STPHQGRGRP ANAPARSTTA AEKS
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