Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1331 |
Symbol | |
ID | 6090838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 1463611 |
End bp | 1466769 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641596395 |
Product | multidrug efflux system subunit MdtB |
Protein accession | YP_001720078 |
Protein GI | 170023573 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGTGA TGCCTCCAAC ACCCGGTGGC GGGCCGTCAC GGCTGTTTAT TCTGCGCCCG GTCGCCACCA CATTATTTAT GATCGCGATT TTACTGGCCG GGATTATCGG TTACCGCGCC TTGCCGGTCT CGGCCCTGCC AGAGGTCGAT TACCCAACCA TTCAGGTGGT GACGCTCTAC CCTGGAGCGA GCCCGGATGT CGTGACATCG TCAATTACCG CGCCGCTGGA ACGCCAGTTC GGCCAGATGT CCGGCCTGAA ACAGATGGCC TCCCAAAGCT CGGGGGGCGC ATCGGTCATT ACCTTGCAAT TCCAGCTCAC CTTGCCGCTG GATGTAGCAG AACAAGAAGT GCAGGCTGCC ATTAACGCAG CGACCAACCT ACTGCCTTCC GACCTGCCTT ATCCACCGAT TTACAATAAA GTGAATCCTG CGGATCCCCC CATTCTAACG CTGGCTGTAA CCGCGACCGC CATCCCCATG ACACAAGTAG AAGACATGGT GGAAACCCGC ATTGCGCAGA AAATTTCACA AGTCACGGGT GTCGGTTTAG TTACCCTCTC CGGTGGTCAG CGCCCGGCGG TACGGGTGAA ATTAAATGCG CCTGCCGTGG CGGCACTGGG GCTGGACAGC GAGACCATTC GCACCGCCAT CAGTAATGCC AACGTCAATT CCGCCAAAGG CAGTTTGGAT GGGCCAACCC GTTCGGTGAC GCTATCAGCC AATGATCAGA TGAAGTCCGC CGAAGAGTAC CGTGACCTGA TCATCGCCTA CCAAAATGGT GCGCCCATCC GCTTACAAGA TGTCGCCACC ATTGAACAAG GGGCGGAAAA TAACAAACTG GCCGCCTGGG CCAATACTCA ATCAGCAATT GTGTTGAATA TCCAACGTCA ACCTGGGGTC AATGTGATCG CCACCGCTGA CAGTATTCGC GAAATGCTGC CTGAGCTGAT CAAAAGCCTG CCTAAATCGG TTGATGTCAA GGTGCTGACC GACCGCACCA GCACCATCCG CGCCTCGGTC AATGATGTGC AATTCGAGTT ACTGCTGGCC ATTGCACTGG TCGTGATGGT GATTTATCTG TTTCTGCGTA ATGCCGCCGC AACCATTATT CCCAGTATCG CGGTGCCGTT ATCGCTGGTC GGTACCTTCG CCGCCATGTA TTTTCTGGGC TTTTCGATCA ATAACCTGAC ATTGATGGCC CTCACCATCG CCACCGGTTT TGTGGTGGAT GACGCTATCG TGGTGATTGA AAATATCTCC CGTTATATCG AAAAGGGAGA GAAGCCGCTC GATGCCGCGT TGAAGGGGGC CGGTGAGATC GGTTTTACCA TTATTTCACT GACCTTCTCA TTGATTGCCG TGTTAATTCC GCTGCTGTTT ATGGAGGATA TCGTTGGCCG GTTGTTCCGC GAATTTGCCG TGACGCTGGC GGTCGCTATC CTGATCTCGG CGGTGGTTTC CCTGACCCTA ACACCGATGA TGTGCGCGCG GATGCTCAGT TATGAGTCAC TGCGTAAACA AAACCGCCTG TCTCGCGCCA GTGAGAAATT CTTTGACTGG GTGATCGCCC ATTATGCTGT CGCCCTGAAA AAAGTCCTGA ATCATCCGTG GCTGACCCTA AGTGTCGCGT TCAGCACACT GGTGCTGACG GTGATACTTT ACTTGCTGAT CCCAAAAGGC TTTTTCCCAT TACAAGACAA CGGGCTGATT CAAGGGACAC TGGAAGCGCC GCAATCCGTT TCGTTCAGTA ATATGGCCGA ACGGCAGCAG CAGGTGGCCG CCATTATCCT CAAAGATCCG GCAGTAGAAA GCCTGACCTC GTTTGTCGGC GTTGATGGCA CCAATGCCAC CCTCAATAAT GGCCGTTTGC AGATCAACCT TAAACCGTTA AGTGAACGGG ATGATCGCAT TCCACAGATT ATTACCCGTT TACAGGAGAG TGTCAGTGGG GTGCCCGGTA TCAAACTGTA TTTGCAGCCG GTACAAGATT TGACCATTGA TACCCAGCTC AGCCGGACAC AATATCAGTT CACGCTGCAA GCCACTTCGC TGGAAGAACT CAGTACCTGG GTGCCCAAAC TGGTCAATGA ATTGCAGCAA AAAGCGCCGT TTCAGGATGT GACCAGTGAC TGGCAAGATC AGGGGCTGGT GGCGTTTGTT AATGTGGATC GCGACAGTGC CAGCCGTTTG GGCATTACCA TGGCAGCCAT CGACAACGCC TTGTATAACG CCTTTGGTCA ACGGCTGATT TCCACCATTT ATACGCAGTC CAATCAATAC CGGGTGGTGT TAGAGCATGA TGTGCAAGCC ACGCCAGGAC TGGCGGCATT CAATGATATT CGCCTGACCG GTAGCGATGG CAAAGGGGTG CCACTGAACA GTATTGCCAC CATTGAAGAG CGTTTTGGGC CACTGTCTAT CAACCATTTG AATCAATTCC CGTCAGCAAC GGTATCGTTC AATCTGGCGC AGGGTTACTC CCTCGGAGAG GCGGTAGCCG CCGTGACCTT GGCCGAAAAA GAGATCCAAC TGCCTGCGGA TATCACCACG CGTTTCCAAG GCTCGACGCT GGCCTTCCAG GCCGCATTGG GCAGTACGCT TTGGCTGATT ATCGCCGCCA TTGTGGCGAT GTATATTGTG CTCGGCGTGT TGTATGAAAG TTTTATTCAT CCAATAACTA TTTTGTCCAC CTTGCCGACC GCGGGTGTCG GGGCCTTGTT AGCGTTGATG CTAACCGGCA ATGAACTGGA TGTGATTGCC ATCATCGGGA TTATTTTGTT GATAGGCATC GTGAAAAAGA ACGCCATCAT GATGATCGAC TTTGCCCTGG CTGCCGAGCG CGATCAGGGG ATGACGCCGT ATGACGCTAT CTATCAAGCC TGTCTACTGC GTTTTCGCCC GATCCTGATG ACCACGCTGG CCGCGCTGTT CGGTGCCTTG CCATTGATGT TGAGTACCGG TGTCGGTGCC GAACTCCGTC AACCGCTGGG GGTGTGTATG GTCGGTGGGC TGATTGTCAG TCAGGTGCTG ACGCTGTTTA CCACGCCCGT TATTTACCTG CTATTTGATA AATTGGCGCG GAATACTCGG GGGAAAAATC GCCATCGTGA TGAGGATATT GACTCGTCTG AGTTGCTGAA CGGACAGGAG CCACAGTGA
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Protein sequence | MQVMPPTPGG GPSRLFILRP VATTLFMIAI LLAGIIGYRA LPVSALPEVD YPTIQVVTLY PGASPDVVTS SITAPLERQF GQMSGLKQMA SQSSGGASVI TLQFQLTLPL DVAEQEVQAA INAATNLLPS DLPYPPIYNK VNPADPPILT LAVTATAIPM TQVEDMVETR IAQKISQVTG VGLVTLSGGQ RPAVRVKLNA PAVAALGLDS ETIRTAISNA NVNSAKGSLD GPTRSVTLSA NDQMKSAEEY RDLIIAYQNG APIRLQDVAT IEQGAENNKL AAWANTQSAI VLNIQRQPGV NVIATADSIR EMLPELIKSL PKSVDVKVLT DRTSTIRASV NDVQFELLLA IALVVMVIYL FLRNAAATII PSIAVPLSLV GTFAAMYFLG FSINNLTLMA LTIATGFVVD DAIVVIENIS RYIEKGEKPL DAALKGAGEI GFTIISLTFS LIAVLIPLLF MEDIVGRLFR EFAVTLAVAI LISAVVSLTL TPMMCARMLS YESLRKQNRL SRASEKFFDW VIAHYAVALK KVLNHPWLTL SVAFSTLVLT VILYLLIPKG FFPLQDNGLI QGTLEAPQSV SFSNMAERQQ QVAAIILKDP AVESLTSFVG VDGTNATLNN GRLQINLKPL SERDDRIPQI ITRLQESVSG VPGIKLYLQP VQDLTIDTQL SRTQYQFTLQ ATSLEELSTW VPKLVNELQQ KAPFQDVTSD WQDQGLVAFV NVDRDSASRL GITMAAIDNA LYNAFGQRLI STIYTQSNQY RVVLEHDVQA TPGLAAFNDI RLTGSDGKGV PLNSIATIEE RFGPLSINHL NQFPSATVSF NLAQGYSLGE AVAAVTLAEK EIQLPADITT RFQGSTLAFQ AALGSTLWLI IAAIVAMYIV LGVLYESFIH PITILSTLPT AGVGALLALM LTGNELDVIA IIGIILLIGI VKKNAIMMID FALAAERDQG MTPYDAIYQA CLLRFRPILM TTLAALFGAL PLMLSTGVGA ELRQPLGVCM VGGLIVSQVL TLFTTPVIYL LFDKLARNTR GKNRHRDEDI DSSELLNGQE PQ
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