| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1291 |
|---|
| Symbol | |
|---|
| ID | 6089091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1420621 |
|---|
| End bp | 1421370 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641596359 |
|---|
| Product | type IV pilus biogenesis/stability protein PilW |
|---|
| Protein accession | YP_001720042 |
|---|
| Protein GI | 170023537 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGA CAAAACTGTG GAGAGTTTGC CTGGTCGTAA GTGTATTGAC AGGGTGCTCC
GGTACCCCAC CGGAGAACAC GAGTCAGGCA GTTGCTGGGC AGACACGCTT ACAACTGGGT
TTAGCGTATT TGGCACAAGG CGATCTTACT GCCGCGCGGA AGAACCTTGA AAAAGCGGTA
GAGGCGGATC CACAGGATTA TCGCACTCAA TTAGGGATGG CATTTTATGC GCAACGTATT
GGTGAAAACA GTGCCGCAGA GCAGCGTTAT CAACAAGCAA TGAAACTGGC TCCGGGAAAT
GGCACTGTAC TGAATAATTA CGGTGCGTTT CTGTGTAGTT TAGGGCAGTA TGTATCGGCG
CAACAACAGT TTAGTGCTGC GGCATTGCTA CCTGATTACG GTCAGGTTGC TGATAGTCTG
GAAAACGCAG GTTATTGCTT TTTACGGGCT AATCAGGATA AACAAGCTCG GGTCTTGTTG
AGCCGGGCGT TGAAGTATGA TCCGGATAAA GGCGAGCCTT TGCTTGCGGA AGCCCAAAGG
CATTTTGGGG AAGGTAATCG CGCACAAGCG CAACTATTAC TGGATGTTTA CCAACATACG
CTTCCAGCCA GTGCTGAGAG TTTATGGTTA CAAATTCGTT TCGCCGCGCT GGCAGGCCGT
CAAGATAGTG TACAACGCTA TGGCAAGCAG CTTGCGCGAA GTTTTCCACA ATCCAAACAG
TACCAGCATT TTCTAGCTAA TGAATACTGA
|
|---|
| Protein sequence | MKLTKLWRVC LVVSVLTGCS GTPPENTSQA VAGQTRLQLG LAYLAQGDLT AARKNLEKAV
EADPQDYRTQ LGMAFYAQRI GENSAAEQRY QQAMKLAPGN GTVLNNYGAF LCSLGQYVSA
QQQFSAAALL PDYGQVADSL ENAGYCFLRA NQDKQARVLL SRALKYDPDK GEPLLAEAQR
HFGEGNRAQA QLLLDVYQHT LPASAESLWL QIRFAALAGR QDSVQRYGKQ LARSFPQSKQ
YQHFLANEY
|
|---|
| |