Gene YPK_1275 details

Gene Information

• Locus tag: YPK_1275
• ID: 6089623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 1403105
• End bp: 1403662
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641596343
• Product: DNA-binding transcriptional regulator IscR
• Protein accession: YP_001720026
• Protein GI: 170023521
• COG category: [K] Transcription
• COG ID: [COG1959] Predicted transcriptional regulator
• TIGRFAM ID: [TIGR00738] rrf2 family protein (putative transcriptional regulator); [TIGR02010] iron-sulfur cluster assembly transcription factor IscR

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.000014653
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGACTAAAA CACTCAAGAA TGTCAAAATT CTGTTTCGTG TTCACCAACA GGTAACTTTA 
GCTATGAGAC TGACATCCAA AGGCCGCTAT GCCGTAACCG CCATGCTTGA TGTGGCATTA 
CATTCCCAGG ACGGGCCCGT TCCTCTGGCA GATATTTCGG AACGTCAGGG GATCTCGTTA 
TCCTATCTGG AACAACTTTT TTCACGCCTA CGTAAAAATG GCTTAGTCGC CAGCGTACGC 
GGCCCAGGCG GTGGTTATCT GCTGGGCAAA GATGCATCAG CAATCGCGGT TGGCGCGGTT 
ATCACTGCCG TTGACGAATC CGTTGATGCA ACCCGTTGTC AGGGTAAAGA AGGCTGTCAG 
GGCGGAAATC GCTGCCTGAC ACATACCCTG TGGCGTGATT TGAGCGAGCG TATCAGCAGC 
TTCCTCAACA ATATTACATT GGCAGAACTG GTTAATAACC AAGATATCCT AGAGGTAGCG 
GATCGTCAGA ATAACGATAC GCGCCGCACG GCTAATGGCC GACCGCAAGA GACGATTAAC 
GTCAATCTGC GCGCATAA 

 

Protein sequence

MTKTLKNVKI LFRVHQQVTL AMRLTSKGRY AVTAMLDVAL HSQDGPVPLA DISERQGISL 
SYLEQLFSRL RKNGLVASVR GPGGGYLLGK DASAIAVGAV ITAVDESVDA TRCQGKEGCQ 
GGNRCLTHTL WRDLSERISS FLNNITLAEL VNNQDILEVA DRQNNDTRRT ANGRPQETIN 
VNLRA