Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1268 |
Symbol | |
ID | 6088340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1395821 |
End bp | 1396360 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641596336 |
Product | virulence-related outer membrane protein |
Protein accession | YP_001720019 |
Protein GI | 170023514 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000000113528 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGA CATTACTGGT CTCTTCTTTA ATTGCATGTT TATCAATTGC GTCTGTTAAT GTGTATGCCG AAGGCGAAAG CAGTATTTCT ATTGGATATG CTCAAAGTCG TGTCAAGGAC GATGGGTACA AGTTGGATAA AAATCCAAGA GGTTTCAACC TGAAGTATCG TTATGAATTC AATAATGACT GGGGAGTGAT AGGTTCATTT GCTCAGACTC GCCGGGGGTT CGAGGAATCT GTTGACGGAT TCAAACTTAT TGATGGTGAT TTTAAGTACT ACTCAGTGAC TGCGGGGCCT GTTTTCCGCA TTAACGAGTA TGTTAGCTTG TATGGATTAT TGGGGGCAGG TCATGGAAAG GCTAAAGTTT CCTCAATATT TGGTCAATCA GAGAGTAGAA GTAAAACATC TCTGGCATAC GGTGCCGGAT TACAATTTAA TCCACATCCA AATTTTGTCA TTGATGCTTC ATATGAATAC TCCAAACTCG ATGATGTGAA AGTGGGTACT TGGATGCTTG GCGCGGGTTA CCGGTTCTAA
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Protein sequence | MNKTLLVSSL IACLSIASVN VYAEGESSIS IGYAQSRVKD DGYKLDKNPR GFNLKYRYEF NNDWGVIGSF AQTRRGFEES VDGFKLIDGD FKYYSVTAGP VFRINEYVSL YGLLGAGHGK AKVSSIFGQS ESRSKTSLAY GAGLQFNPHP NFVIDASYEY SKLDDVKVGT WMLGAGYRF
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