Gene YPK_1183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1183 
Symbol 
ID6087650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand+ 
Start bp1319195 
End bp1319851 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content46% 
IMG OID641596251 
Productanti-RNA polymerase sigma factor SigE 
Protein accessionYP_001719934 
Protein GI170023429 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.013522 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAAAG AAAAGCTTTC CGCTTTGATG GATGGAGAAA CTCTCGATAG CGAGCTGCTG 
GGGATTTTAT CGAAAGATAA GGCGTTACAG CAAAGCTGGC AGAGCTACCA TTTAATCCGT 
GACACTCTAC GCGGAGACGT TGGCAATGTT TTACATCTGG ATATTGCTAG TCGTGTAGCA 
GAAGCGCTCA AGAACGAGCC AGCGCGCTTG ATTCCTATTG CTATACCTGA ATCTCAGCCA 
CAGCCACATC TTTGGCAGAA AATGCCTTTC TGGCAAAAAG TCCGTCCATG GGCCAGTCAG 
ATTACTCAGG TGGGAATGGC CGCTTGTGTT TCTCTCGCTG TCATTGTTGG TGTTCAACAA 
TATAACCAAC CGGCACAAAA TTATTTACAA CCTGAATCAC CGGCGTTTAA TACCTTGCCA 
ATGATGGGTA AAGCATCACC AGTCAGTTTT GGTGTCCCTG CTGATGGTTC TTTTGGTACT 
AATCAACAGA ATCAGGTTCA AGAGCAGCGT CGGCGCGTCA ACATGATGAC TCAATTGCAA 
GATTTTGAAT TGCAACGTCG TTTGCCACAA ACTGATGTAT TGCAGCAGCC TTCAGATTCA 
ACGCAAGCCG CAATTCAAGT CCCTGGAACT CAATCCTTAG GAATGCAGCA GCAGTAA
 
Protein sequence
MQKEKLSALM DGETLDSELL GILSKDKALQ QSWQSYHLIR DTLRGDVGNV LHLDIASRVA 
EALKNEPARL IPIAIPESQP QPHLWQKMPF WQKVRPWASQ ITQVGMAACV SLAVIVGVQQ 
YNQPAQNYLQ PESPAFNTLP MMGKASPVSF GVPADGSFGT NQQNQVQEQR RRVNMMTQLQ 
DFELQRRLPQ TDVLQQPSDS TQAAIQVPGT QSLGMQQQ