| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1164 |
|---|
| Symbol | |
|---|
| ID | 6090722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1303296 |
|---|
| End bp | 1304333 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596232 |
|---|
| Product | cyclic-AMP phosphodiesterase |
|---|
| Protein accession | YP_001719915 |
|---|
| Protein GI | 170023410 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5212] Low-affinity cAMP phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.476348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTGA AATATCTCTC GATTAAATCT GCATCAGATA AGATAAAGAG TGGTCTGCTA
AAGACGGGCG TGATTTTATC TTTCAGTCTC TTCAGTTCAC TGTCCACTGC GGCTTTTGAG
GTCGTGGCGC TTGGCGTTGA TGGGGGTGTC AGTGATGGTA ATCTGACCTC TTATCTGATT
CGCAATGATA GCCAGCCGCT GTATTTGGGG CTGGATGCCG GTTCCGTGTT GCCAGGGATC
GCTCGTGCCT TGGAGAAAGG CCATTTTGCA GCGATCACCG ATGCCATGGC CGCTCCGCTA
ACCCGGCAGG GCTATATTTT TCGCCAGAGC ATTAACAGTT ATTTTATTAG CCATGCGCAT
TTAGATCATG TCTCTGGCCT GATTATCGGT TCACCGGATG ACAGCAAGAA AACCATTTAT
GCTTCGGCTG ATACCATTGA TGTGCTGAGA AACTACTATT TTAACTGGCG CGTTTGGCCC
AATTTTACCG ACAGCGGCAG TGGGGCTCGT TTAGGGACTT ACCGTATGCA AGTGGTGCGC
CCGGCTCAGT CTTTGAGCTT GGGGTTGACC CGCTTAACGG GGGAAATGTA TCCACTGAGT
CATGATAAAT CGCCCTCATC CATGCTGCTT ATCAGTAGTA ATAATGAGTT CTTTGCCTAT
TTCGGTGATA CCGGCCCGGA TGATGTCGAA AAATCCAAAA ATCTGGATAC GGTCTGGCGC
AAACTGGCGG AGAAGGTTAC ACAACAACAA CTGAAAGGGA TGATTATTGA GGTCTCGTAT
CCTAATGATG TGGCAGACAA TAAGTTGTTT GGCCACATGA CACCAACGTG GTTGTTGAAA
GAATTGAAAA AACTGGAGCA ATACAGTGGG GAAGGCCAGC CACTAAAAGG ATTACCGGTG
GTGATTAGCC ACATAAAACC CTCATTCCAG CAGGGGCAGG ATGTGCGTAA ATTAATTCTC
TCTGAGTTGC AACAAGGCAA TGATATGGGA ATCGAATTTA TCCTGATGGA ACAAGGTGAT
AGCCAGAAAT TCCAGTGA
|
|---|
| Protein sequence | MLLKYLSIKS ASDKIKSGLL KTGVILSFSL FSSLSTAAFE VVALGVDGGV SDGNLTSYLI
RNDSQPLYLG LDAGSVLPGI ARALEKGHFA AITDAMAAPL TRQGYIFRQS INSYFISHAH
LDHVSGLIIG SPDDSKKTIY ASADTIDVLR NYYFNWRVWP NFTDSGSGAR LGTYRMQVVR
PAQSLSLGLT RLTGEMYPLS HDKSPSSMLL ISSNNEFFAY FGDTGPDDVE KSKNLDTVWR
KLAEKVTQQQ LKGMIIEVSY PNDVADNKLF GHMTPTWLLK ELKKLEQYSG EGQPLKGLPV
VISHIKPSFQ QGQDVRKLIL SELQQGNDMG IEFILMEQGD SQKFQ
|
|---|
| |