| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1050 |
|---|
| Symbol | |
|---|
| ID | 6087083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 1187508 |
|---|
| End bp | 1188713 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596116 |
|---|
| Product | cysteine sulfinate desulfinase |
|---|
| Protein accession | YP_001719804 |
|---|
| Protein GI | 170023299 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT TTAATCCAAT GGATTTTCGT CGGGAATTCC CTGCGCTCAG TGATAAATTA
ACCTATCTGG ACAGTGCGGC GACCGCCTTG AAACCACGTG CAATGATTGA CGCGACACAG
CAATTTTATC AGCAGGATTC AGCAACGGTA CACCGCAGCC AACATCAATC GGCGCTGTCA
TTAACGGTTC GCTTTGAAAA CACCCGCCAA CAAGTGGCTG ATTTTATTAA CTCATCTACA
GCAGAAAATA TTATCTGGAC GCGAGGAACA ACTGAAGCCA TCAATCTGAT CGCGCAAAGT
TATGCCCGCC CCCGTTTACA ACCTGAAGAT GAAATTATTG TCAGCGAAGC TGAACATCAT
GCGAATTTAA TTCCCTGGTT GATGGTAGCG GAGCAGACCG GTGCAAAAAT AGTCAAATTA
CCTATTGGCC TTGATCATCT GCCAGATTTA CAGCAACTCC CTCAACTACT TAATGAAAAA
ACACGCATAT TAGCGCTGGG GCAGATGTCT AACGTAACAG GCGGTAGCCC TGATCTGGCT
CAGGCTATTA GGCTGGCTCA CCAATATGAC TGTGTTGTCG TGGTTGACGG TGCTCAGGGG
ATTGTTCATT GCCCAGCCGA TGTTCAGGCA TTGGATATTG ATTTTTATGC ATTCTCTTCC
CATAAATTGT ATGGCCCAAC CGGCATTGGC GTGCTGTATG GGAAGACTGA ATTATTAGAA
GAGATGCCCG CCTGGCAAGG CGGCGGTAAA ATGCTTACCC ATGTATCATT CGGGGGCTTT
ACACCTCATG AAGTGCCTTA TCGCTTTGAA GCGGGTACAC CCAATATTGC TGGCGTTATT
GGTTTATCAG CGGTACTCAA ATGGCTGGAA CATATTGATC TGGAAGAGGC CGAAGTTTAT
AGCCAAGGTT TAGCTACAAT GGCAGAAAAT AAGCTCGCAC AATTACCGGG TTTTCACAGT
TACCGTTGTC AGCAATCCAG TTTATTAGCA TTTACTTTCG ATGGTGTTCA TCACAGTGAT
TTAGTGGCGT TATTGGCCGA GCAAGGTATC GCACTACGTG CTGGGCAGCA CTGCGCACAG
CCACTGATGG CGGCTCTGGG AGTCAATGGC AGTCTGCGGG CTTCTTTTGC GCCTTATAAT
ACCCCCCAAG ATGTTGAAAT GCTTTGCTCG GCGCTTGGTA AGGCATTGGA ACTGCTTCAA
GACTAA
|
|---|
| Protein sequence | MKVFNPMDFR REFPALSDKL TYLDSAATAL KPRAMIDATQ QFYQQDSATV HRSQHQSALS
LTVRFENTRQ QVADFINSST AENIIWTRGT TEAINLIAQS YARPRLQPED EIIVSEAEHH
ANLIPWLMVA EQTGAKIVKL PIGLDHLPDL QQLPQLLNEK TRILALGQMS NVTGGSPDLA
QAIRLAHQYD CVVVVDGAQG IVHCPADVQA LDIDFYAFSS HKLYGPTGIG VLYGKTELLE
EMPAWQGGGK MLTHVSFGGF TPHEVPYRFE AGTPNIAGVI GLSAVLKWLE HIDLEEAEVY
SQGLATMAEN KLAQLPGFHS YRCQQSSLLA FTFDGVHHSD LVALLAEQGI ALRAGQHCAQ
PLMAALGVNG SLRASFAPYN TPQDVEMLCS ALGKALELLQ D
|
|---|
| |