Gene YPK_1044 details

Gene Information

• Locus tag: YPK_1044
• Symbol: recD
• ID: 6090375
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 1178934
• End bp: 1180907
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641596107
• Product: exonuclease V subunit alpha
• Protein accession: YP_001719798
• Protein GI: 170023293
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGACGC TATTGGCTCA GGCTGCTCGA GACCGCTTAT TGCGCCCACT GGATGTGCAG 
TTTTCACGAA TGATTGCCGG CGATGATGAC CCGCGGTTAC AACTGGCCGC AGCGATCCTT 
AGTGCAGAAG TAGGGGCCGG TCATGTTTGC CTGCCATTAC GCTATTTACA GCCAGAACTG 
CTATTCGGTG GGCGGCAACC CGATTTATCA CTGGCGCTAT GGCAGGCGGC GGGCTCGCCA 
GATAAAGCAC AGTGGCTACA GGCATTACAA AACGCCCCAG TAGTCAGTGA TGGCTCTCAA 
CCAACACCAT TAGTGCTACA GCAGGAACGT TTATATCTGC AACGAATGTG GCAGTACGAA 
GGAGATGTCG TCCAATTTAT TGCCAGTGAC TCTGTTTTTA TAAACAGAGA TAGTGATTTT 
ATGACCAGTA AAGGTATTGC CACTTCTGTT GATGAATCGC TATTACGGGA GACGCTAGAC 
GCTTTGTTTG GTTGTGCTGG TAGTGAGGTT GATTGGCAAA AAGTGGCGGC AGCGGTTGCG 
GCTACCCGTA GAATTTCAGT TATTTCCGGC GGGCCGGGCA CGGGGAAAAC CACCACAGTA 
GCCAAACTTT TGACAGCATT GATACGGCTT AGCCAGGGGC AACGTTTACG TATTCAACTT 
GCGGCCCCAA CCGGTAAAGC CGCTGCACGC CTTACTGAAT CACTGGGCAA AGCGATTCGG 
CAATTCTTTC TTACTGATGA TGAACGTAAA TTATTCCCTG ATCAGGCTTC GACCTTGCAC 
CGTTTACTGG GTGTTCAGCC CAATAGCCAG CGCCTGCGTT ACCACCGTGG TAATCCATTA 
AATCTTGATG TACTGGTCGT TGATGAAGCA TCAATGGTTG ATTTACCTAT GATGGCGCGC 
TTAATTGCGG CATTACCTGC CAAGGCCAAG GTGATATTCC TTGGTGACCG TGACCAACTG 
GCCTCGGTTG AGGCGGGGGC GGTTCTGGGG GATATCTGCC GTTTTGCCGA ATTAGGTTAC 
AGCGAGCAAC GGGCACAGCA ATTAACTCAG TTAACGGGCT ATTTATTAAC TAATAATGCA 
TTAACCAGCA ATGTACTAGC CAGCAATGTA CTAACCAATA AGGCATTAGC CAATAAAGCG 
CAGCCAGATG AAACCTATTC TGATTCAGCG AATGTACGCG ATAGCCTGTG TTTACTGCGT 
AAAAGTTACC GCTTCGATGA AAAGTCAGGG ATTGGGCAGC TTGCTCTGGC CGTTAATGCA 
GGGGAGTATC GGCAGGCTTT ATCCGTATTA AACAGTGCGT ATTCTGATGT TGAACGCTTC 
CCGCTGGCCG ATGAGGAAGA TTATCAGGTA CTGCTAGAGG CTTGTGCTGT GGGGTATCAG 
CATTACCTCG AACGGGTGGC TGCGTTAGCC CCTGCGGCAG AGGTATTGGC AGCATTTGGC 
CGCTACCAAC TGCTGTGTGC ATTACGTTCC GGGCCATTCG GTGTCAGTGG CTTAAACGAA 
CGCATTGAAC AGGTTTTACA TCGTAAAGGA TTCATTATCC GTCCATCAGG GCCTTCTGGC 
CGTTGGTATG TTGGGCGGCC AGTGATGATA GAACTTAATG ATAGCGCACT TGGCTTATTC 
AACGGGGATA TTGGTATTGC CTTACATGAT AATGAAGGCG AGCTGCGGGT ATATTTTCAA 
TTGCCCGATG GCAATATAAA GTCAGTACAA CCTAGTCGCC TTCCCAGCCA TGAAACCGCT 
TATGCTATGA CGGTTCATAA ATCGCAGGGT TCAGAGTTTG AACACACAGC ATTGGTATTA 
CCTAACACGT TCATGCCCGT GTTAACTCGT GAATTGGTCT ATACCGCCAT TACCCGCGCC 
CGTCAGCATC TGACGCTTTA TTGCAGCGAT GCCGTGCTAA GTCATGCCAT ACGTACACCG 
ACTCTCCGGC TTAGCGGGCT AGTTGATCGC TTGAATACAT TAAATCGCCA ATAA 

 

Protein sequence

MMTLLAQAAR DRLLRPLDVQ FSRMIAGDDD PRLQLAAAIL SAEVGAGHVC LPLRYLQPEL 
LFGGRQPDLS LALWQAAGSP DKAQWLQALQ NAPVVSDGSQ PTPLVLQQER LYLQRMWQYE 
GDVVQFIASD SVFINRDSDF MTSKGIATSV DESLLRETLD ALFGCAGSEV DWQKVAAAVA 
ATRRISVISG GPGTGKTTTV AKLLTALIRL SQGQRLRIQL AAPTGKAAAR LTESLGKAIR 
QFFLTDDERK LFPDQASTLH RLLGVQPNSQ RLRYHRGNPL NLDVLVVDEA SMVDLPMMAR 
LIAALPAKAK VIFLGDRDQL ASVEAGAVLG DICRFAELGY SEQRAQQLTQ LTGYLLTNNA 
LTSNVLASNV LTNKALANKA QPDETYSDSA NVRDSLCLLR KSYRFDEKSG IGQLALAVNA 
GEYRQALSVL NSAYSDVERF PLADEEDYQV LLEACAVGYQ HYLERVAALA PAAEVLAAFG 
RYQLLCALRS GPFGVSGLNE RIEQVLHRKG FIIRPSGPSG RWYVGRPVMI ELNDSALGLF 
NGDIGIALHD NEGELRVYFQ LPDGNIKSVQ PSRLPSHETA YAMTVHKSQG SEFEHTALVL 
PNTFMPVLTR ELVYTAITRA RQHLTLYCSD AVLSHAIRTP TLRLSGLVDR LNTLNRQ