Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1040 |
Symbol | |
ID | 6090808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1168392 |
End bp | 1168802 |
Gene Length | 411 bp |
Protein Length | 136 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641596103 |
Product | prepilin peptidase dependent protein-like protein |
Protein accession | YP_001719794 |
Protein GI | 170023289 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4967] Tfp pilus assembly protein PilV |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.635785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCTCGAT TAATAACCAA ACGCGCTTAT GGACAAACTA TTTCAGTGGA GACAGGCGGT TTCAACCTAC GTCACCTGCG TGGATTCAGC TTACTGGAAG TTTTGATTGC CGCATTATTT TTCTCAATCT CACTACTGGG GCTACTGCAA TACCATCAGG CACTTTTACA GGGCTTTGCC TCCTCATGGC AACAACGGCA AGCCTGGTCG TGGTTACATC AATATATGGA GAGTCAGAGC GGTACAGACC CCGAAGAACG GTGGGCACCT GAAGTGAAAC CAGGCTGGCA CTATCGCCAA TTTATCGATC GCATTGAGGG GGATTGCCGG GAATTTAGCG TTAAGTTGAT AACCCGCCAA GACTCGCCAG TAGAATTAAG CCGATGGTTT TGTTCAACTG AGATGATTTA G
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Protein sequence | MPRLITKRAY GQTISVETGG FNLRHLRGFS LLEVLIAALF FSISLLGLLQ YHQALLQGFA SSWQQRQAWS WLHQYMESQS GTDPEERWAP EVKPGWHYRQ FIDRIEGDCR EFSVKLITRQ DSPVELSRWF CSTEMI
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