| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0993 |
|---|
| Symbol | |
|---|
| ID | 6087694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 1114020 |
|---|
| End bp | 1115186 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596056 |
|---|
| Product | AgaS family sugar isomerase |
|---|
| Protein accession | YP_001719747 |
|---|
| Protein GI | 170023242 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2222] Predicted phosphosugar isomerases |
|---|
| TIGRFAM ID | [TIGR02815] putative sugar isomerase, AgaS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.491243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAT ATTTAGGGTA CAGCCGGGAA GAACTGACTC GCTTACATGC CAGTTGGACC
GCACAGGAAA TTGAACAACA GCCTGCATGT TGGGGAAAAA CACAGCGTAT TGTGGAAGAG
AGTCAGGCAG CGATTAATGA TTTTCTGCAT CAGGCATTAG CCGCGAGTAA CACGCGGATT
ATTTTTACCG GTGCTGGAAC CTCAGCCTTT GCCGGGCGGG CGCTGGCTCC GCTGTTAGCA
CCTTATCTGT CCCATCGGAT TGAAGCGATT GCGACAACGG ATTTGGTGGC AACACCAGAA
CAATATTTCT CCGAAGATAT TCCGACGCTG CTGGTTTCAT TTGCCCGTTC CGGCAACAGC
CCGGAAAGTG TGGCTGCGTT ACAAGTGGCA TCGGCCTGTT TATCTCGCTG TTTCCACTTG
GTATTGACCT GTAACCAGGG CGGCCAGTTA TATCAATATT GCCAGACGGC ACCAGGTGCA
TTGGCCGTGC TGATGCCAGC AGAAACCAAT GACCAATCAC TGGCGATGAC CTCCAGTTTC
TCCTCCATGA TGATGGCTGC GATGGCTATT TTTGCTGGGA TTGATAAGTA TTCGAAAGAA
ATTGAAAGAT TTTGTAAGGG ATCTGCGGAT TGGTTCAAAG AAATTAATCA TAAAATCATC
GATAATACTA AAAGTTCGCA ATACCAAAGG GTTATCTACT TAGGTAGTGG CGGACTACAG
GGGCTGGCCC AAGAGTCAGC ACTGAAATTA CTCGAATTAA CCGCAGGTAA AGTTGTGGCT
ACTTTTGATA CTCCGTTGGG ATTCCGCCAT GGTCCGAAAT CAATCGTTAA TCCGGACACT
TTGGTTGTTG TTTACATCTC TAATGATCCC TACACGCGTC AATATGATCT CGACCTGTTA
GCTGAGATCC GCGCCAACAA CGTTGCCGGT AAGGTTATCG CTATCGCAGC ACAATCAGAT
GCTTATGTCA CAGCTGGTGA CCATGTTCTG GTACCTGGTA TGGCAGAAAG TTCTGACTTA
GGCCTGCTGT TTGCCTATCT GATGTTTGCA CAATCCTTCG CTTTTCATAG CTCAGTTGCC
TTAAACAACA CGCCGGATAG CCCATCTCCA ACGGGTGAAA TCAATCGCGT GGTGCAAGGT
GTGACTATTT ATCCATTTAA AAAATAA
|
|---|
| Protein sequence | MTQYLGYSRE ELTRLHASWT AQEIEQQPAC WGKTQRIVEE SQAAINDFLH QALAASNTRI
IFTGAGTSAF AGRALAPLLA PYLSHRIEAI ATTDLVATPE QYFSEDIPTL LVSFARSGNS
PESVAALQVA SACLSRCFHL VLTCNQGGQL YQYCQTAPGA LAVLMPAETN DQSLAMTSSF
SSMMMAAMAI FAGIDKYSKE IERFCKGSAD WFKEINHKII DNTKSSQYQR VIYLGSGGLQ
GLAQESALKL LELTAGKVVA TFDTPLGFRH GPKSIVNPDT LVVVYISNDP YTRQYDLDLL
AEIRANNVAG KVIAIAAQSD AYVTAGDHVL VPGMAESSDL GLLFAYLMFA QSFAFHSSVA
LNNTPDSPSP TGEINRVVQG VTIYPFKK
|
|---|
| |