| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0871 |
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| Symbol | |
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| ID | 6087920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 997332 |
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| End bp | 999482 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641595933 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_001719625 |
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| Protein GI | 170023120 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACA TCATAAAATA TGACATTAAT TATTTTTTAA GGTTTGTTTG TTTTAATTAC
TTTATGAACA TAAAGTTTTA TCGTGGTCTG TTTAGTATTT CTATAGTGAT GATTTATTTA
TTTATCCCTG GCACCGCAAC TTCTCAGCTT TATGTGAATA ATGCTGATGA TCAGTCTTGT
TATGCCATTA TGGATGGGCC GTCGGTGGGG CCTATAACTA GTCCGAATTG TAATACTCCA
TCTATTGGGA TTATTAATAC AAATGCGGGG CAGCTATTTG TTGGTGGAAC GGGGGCTGCG
GTATCGGGAA CATTAGGCCC TACTTTTTGG ACAGGGACAT TTGCTACACC GGTCGGCACC
AGTAATACCG CAACTGCATA CGGTATGGTC GTTCAAAGCG GTGGTGCGTA CATCACGGGT
AATACTTACG TACAAGGTGG GTTATTCTTG AATGGGCAAA AAGCGACCAA TCTTGCCCCT
GCGACGATTT CATCTACCTC TACCGATGCG GTAGTTGGTA GCCAGCTTTA TAATCTGGTC
CAAGATGGAA CCCGCTATTT CCATGCTAAC TCAGTGAATC CAACAGACTC ACTGGCCTCT
GGCCTGGAAA CCATTGCTGT CGGGCCAGCG ACAGTGGTCA GTGGAGATAA CGGTGTTGGC
ATTGGTAACA CCGCCCTTGT CGGAACGGCA GCAACGGGGG GAATTGCAAT AGGTTTCGGT
ACTCAGGTGA TAGCTGCCGG GGCTACGGCC ATCGGTTCCG CAGCGCAGGC TCAAGGGGCA
CAATCTCTGG CGTTAGGCGC GGGGGCGGTG ACCAGCCAGG CAAACAGTAT CGCGTTGGGG
GCTGCTTCGA TCAATACGGT CGGCGCTCAG AGCAGTTACA GTGCTTATGC ACTAACGGCT
CCGCAGGTAT CGGTGGGGGA GTTAGGGATT GGCACCGCAT TGGGTAATCG TAAGATTACC
GGTGTCGCAG CTGGATCGGC GAGTTCTGAT GCGGTCAATG TTGCTCAGTT GACTGCTGTT
GGTGATCAGG TGCAGCAGAA TACCGCGAAC ATCACCAGCC TGGGTGGCCG GGTTACCACC
ATTGAGGGGA GCATGGCCAG CATCGCCAAT GGTGGCGGTG TGAAGTATTT CCATGCCAAC
TCGACTCAGC CTGACTCGGT AGCCAGTGGT ACCCATTCGG TGGCCATCGG GCCTGCTTCT
CTGGCCTCTG GGGCTGCTTC TCTGGCTTCG GGTAATGCTG CTTTGGCTTC GGGGGCAGGG
GCGGTGGCGA TAGGGGATGG TGCTGCCGCC AGCGCGGACG GCAGTGTTGC CATTGGTCAG
GGATCTGGTG ATAACGGGCG TGGCGTAGAG AACTACATCG GTAAGTATTC CAATGCGAGT
AACACCAGCT CGGGTACCGT ATCAGTGGGT AATACTGCTA CTGGAGAAAC CCGGACGTTC
AGCAATGTTG CCGATGGGCT GCAGGCCACC GATGCGGTCA ATTTGCGACA ACTCGATGGT
ATTGCTGCCT CTATCGTCGT CGTCGAAAAC AACGTTTCTG GGCTCCAGAA TGGTACCGAT
GGTATGTTTC AGGTGAATAA TAGTAGCGGT CTTGCCAAGC CATCCGCAAC CGGTGCCAAT
TCAGCAACTG GTGGTGCCGG TTCTGTGGCT TCCGGCAATA ACAGTACCGC GTTTGGCTCA
GGTGCTAAAG CAACAGCGGC AAACAGTGCA GCCTTGGGGG CTAACTCAGT AGCTGATCGG
GCAAACAGTG TTTCGGTAGG CTCTGTTGGT AATGAACGGC AGATCACCAA CGTCGCCCCC
GCAACTCAGG GAACCGACGC GGTGAACTTC GATCAACTTA AGAGCATCTC CAATCAAACT
AATGCTTACA CGAACCAACG TTATTCCGAG CTGAAGCAGG ATCTGAGGAA ACAAAATAGC
GTGTTGAGTG CAGGGATAGC TAGCGCAATG TCTATGGCGA GCTTGACACA ACCATATACT
TCGGGTTCCA GCATGACCAC TATCGGCGCG GCCAGTTACC GTGGTCAATC GGCTCTGTCG
CTAGGGGTAT CGAGTATTTC TGACAGCGGG AGATGGGGCA GCAAACTACA GGCATCCTCT
AACACTCAAG GTGATTTTGG GATTGGTGTC GGCGTAGGGT ATCAGTGGTA A
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| Protein sequence | MENIIKYDIN YFLRFVCFNY FMNIKFYRGL FSISIVMIYL FIPGTATSQL YVNNADDQSC
YAIMDGPSVG PITSPNCNTP SIGIINTNAG QLFVGGTGAA VSGTLGPTFW TGTFATPVGT
SNTATAYGMV VQSGGAYITG NTYVQGGLFL NGQKATNLAP ATISSTSTDA VVGSQLYNLV
QDGTRYFHAN SVNPTDSLAS GLETIAVGPA TVVSGDNGVG IGNTALVGTA ATGGIAIGFG
TQVIAAGATA IGSAAQAQGA QSLALGAGAV TSQANSIALG AASINTVGAQ SSYSAYALTA
PQVSVGELGI GTALGNRKIT GVAAGSASSD AVNVAQLTAV GDQVQQNTAN ITSLGGRVTT
IEGSMASIAN GGGVKYFHAN STQPDSVASG THSVAIGPAS LASGAASLAS GNAALASGAG
AVAIGDGAAA SADGSVAIGQ GSGDNGRGVE NYIGKYSNAS NTSSGTVSVG NTATGETRTF
SNVADGLQAT DAVNLRQLDG IAASIVVVEN NVSGLQNGTD GMFQVNNSSG LAKPSATGAN
SATGGAGSVA SGNNSTAFGS GAKATAANSA ALGANSVADR ANSVSVGSVG NERQITNVAP
ATQGTDAVNF DQLKSISNQT NAYTNQRYSE LKQDLRKQNS VLSAGIASAM SMASLTQPYT
SGSSMTTIGA ASYRGQSALS LGVSSISDSG RWGSKLQASS NTQGDFGIGV GVGYQW
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