Gene YPK_0839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0839 
Symbol 
ID6090321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp961216 
End bp961947 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content50% 
IMG OID641595901 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001719593 
Protein GI170023088 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000711088 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTATAC CCCGCATTTA CCACCCACAG CCCTTGCAGG CCAATACCGA ACTGGCGCTC 
ACTGATGAAG CCGCAAATCA TGTCGGCCGC GTACTACGGA TGACTGAAGG GCAAAGCCTG
CAATTATTTG ACGGCAGTAA TCAGATTTTT GACGCTGAAA TTATACGGGC AGATAAAAAG
AATCTGATTG TCCGACTCGC TGAAGGGCAA TGGGAAGATC GGGAATCCCC TCTGAATTTA
CATTTAGGGC AGGTTATTTC TCGTGGGGAA AAAATGGAGT TTACCGTCCA GAAATCCATT
GAACTGGGCG TTAATGTGAT TACCCCGCTG TTTTCAGCAC GTTGTGGCGT TAAGCTTGAT
GGCGAGCGTC TGACGAAAAA AATTCAACAG TGGCAAAAAA TTGCTATTGC CGCCTGCGAA
CAATGTGGCC GCAATACGAT CCCAGAGATC CGCGATGCCA TGCAACTTGC TGATTGGTGT
GCTGAATCCG ATGACAGCTT GAAACTGAAT CTGCACCCAC GTGCTAGCAA CAGTATTAAT
ACCCTCCCTT CCTCACTCAA CAAAGTGCGT TTGCTGATTG GCCCAGAAGG TGGCCTCTCT
GCTGATGAAA TTGCGATGAC CTCGCGCCTC GGATTTACGG ATATCCTGCT GGGGCCACGA
GTGCTGCGAA CAGAAACTAC CGCCCTTACC GCAATTACTG CGTTGCAGGT GCGGTTTGGC
GATCTGGGAT AA
 
Protein sequence
MRIPRIYHPQ PLQANTELAL TDEAANHVGR VLRMTEGQSL QLFDGSNQIF DAEIIRADKK 
NLIVRLAEGQ WEDRESPLNL HLGQVISRGE KMEFTVQKSI ELGVNVITPL FSARCGVKLD
GERLTKKIQQ WQKIAIAACE QCGRNTIPEI RDAMQLADWC AESDDSLKLN LHPRASNSIN
TLPSSLNKVR LLIGPEGGLS ADEIAMTSRL GFTDILLGPR VLRTETTALT AITALQVRFG
DLG