| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0833 |
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| Symbol | |
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| ID | 6090152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 955714 |
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| End bp | 956838 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641595895 |
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| Product | twitching motility protein |
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| Protein accession | YP_001719587 |
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| Protein GI | 170023082 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.213742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTCA CAAGCCTGAA TAATCAACAT TCAGATCTGA ATAACCCCGT GTTTAGCCGT
ATAAAAGCCA AACGCATTGA TTTAGAAAAC CCTGACCTTG CCAGTGATGG CTTTAACAAA
CAGGATTTTG CCAATAAGGT GGCGGCTAGT GTAGATCATA ATGCTTCAGA TCTGCACCTC
TGTACCGGTT TTCACCCCGT ATTACGTATC GATGGCGAGC TAAAAACCTT TACTGACTGG
CCGAAGGTCA CTGCTGGTTG GTTAAATGGG CTACGTCGGC ATATGTTGAG TGACGCACAA
GAAAGCCGAT TACAGCAACA GGGGCAGGTT GACTGTGCCT ATACCACCGT GGGCAGTCAA
AGGTTACGGG CGAATATTTT CCAGCAACGA CAGGGCCAAT CCATTGCTTT TCGCATTATT
CCTGCTATTT GTCCGTCACT GACACAATTG GCGGCACCAC CTATTTTGAA CCAATTGATT
CAACAGGATA ATGGACTAAT TCTGGTAACG GGGGCGACGG GCAGCGGTAA ATCGACGACG
CTGAGTGCCA TGATAAGCGC GATTAATCAG CAACAGGCAC GACATATTAT TACCCTTGAG
GACCCGATTG AATTTATTCA TAGCAGTCAA TCATGTTTGA TCCAGCAACG AGAGCTTGGT
CGCCATACTC ACTGTTTTAG TCGTGCCCTG AATGGGGCAT TACGTCAGGA TCCAGATATT
ATTTTACTCG GAGAGTTACG GGATCTGGAG ACTATCCGAT TAGCGCTGAC AGCAGCAGAA
ACCGGGCATC TGGTGCTAGC CACATTGCAT ACCCGCACGG CAACACAGGC TATTGATCGG
CTGATTGATG TTTTTCCTCC TGAGGAGAAA GCCGTTATAC GGACGCAACT GGCTGCCAGT
TTACGCGGTG TTATCACGCA GAAATTGTGT CGTCAAAATG GCGGTGGGCG TATAGCTGTA
TTTGAGATAC TCACGCAAAC CACGGCAGTC AGCCATTTGA TCCGAGAAGG TAAAACCTAT
CAATTACCAA CCGTGATACA GGCCGGAGGG CAATGGGGGA TGCAAACCTT TGAGCAAAGT
ATCGCACAAC GGCAAAAACA GGGGGTTTTG GCTATCAATC ACTGA
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| Protein sequence | MDFTSLNNQH SDLNNPVFSR IKAKRIDLEN PDLASDGFNK QDFANKVAAS VDHNASDLHL
CTGFHPVLRI DGELKTFTDW PKVTAGWLNG LRRHMLSDAQ ESRLQQQGQV DCAYTTVGSQ
RLRANIFQQR QGQSIAFRII PAICPSLTQL AAPPILNQLI QQDNGLILVT GATGSGKSTT
LSAMISAINQ QQARHIITLE DPIEFIHSSQ SCLIQQRELG RHTHCFSRAL NGALRQDPDI
ILLGELRDLE TIRLALTAAE TGHLVLATLH TRTATQAIDR LIDVFPPEEK AVIRTQLAAS
LRGVITQKLC RQNGGGRIAV FEILTQTTAV SHLIREGKTY QLPTVIQAGG QWGMQTFEQS
IAQRQKQGVL AINH
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