Gene YPK_0816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0816 
Symbol 
ID6090582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp933488 
End bp934588 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content54% 
IMG OID641595878 
Productperiplasmic binding protein 
Protein accessionYP_001719570 
Protein GI170023065 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0919646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCTGT TGTTACTTAT TTTCCTGCTC TGCACTTGGG CAGTTAGCGC CAAAACGATT 
ACCGATATTA CCGGCCAACG CATCGAAATT CCGGATAACC CACAGCGTAT CGTATTAGGT 
GAAAGCCGCA TGCTATATAC CCTCGCGTTG CTGGAACCGG GCTACCCCGC CGCTCGCGTG 
GTGGGCTGGC CGTTGGACCT GAAGAAATAC GATCCGCAAA GCTGGGCGCT ATATACCGAT 
AAGTTTCCGC AGATGACCCA CATTCCGGCT CTGGGCAGCA CGGGTCTGCG CGATATCAAC 
CCGGAGAAGG TGCTGGAGTT GGCACCAGAT CTGGTTATCC TGCCAGTACT CGCTAAAACC 
ACTCATGAAG AAATCGCGCT AATTTCCCTG CTCAAGCAAG CGCATATCCC GGTGATCCGC 
GTCGACTTAC GCGTCGATCT GCTCAATCAC ACCATTCCCA GCCTACGCCT GCTCGGCGAA 
GCACTGAACC GCCAAGATCG CGCCGAAGCC TTTATTTCTC TGTATCAGTC CCATATGGAT 
CGCATCCACC AGCGCATCGC CGCTTATCAG GGGCCGCACC CTAGCGTGTT GCTGCAATTG 
CATCTGGGGC GCGGTGACGA ATGCTGCACC ACCACGCTAA AGGGCAATCT CGGCCAACTG 
CTGGAGTTTG CCGGTGGTAA CAACATCGCT GCCGCACAAG TGAAAGGGGT ATTCGGCCAG 
CTTAGCGAAG AGTATGTGCT GGCCCGTTCA CCAGAGATTT ATATTGCTAC CGGCATGGCA 
ACGGCTGGCA GCCAAGCCAA AACGCTGGCG CTCGGCCCAC AGGTCAGCAC CGCGCAAGCG 
CAGGAGAGTT TCCGTCGCGT TATCGCCACG CAAAGCAAAT TGCAGCACCT TCCTGCGATT 
CAAAATGGTC ACGCTTGGGG GTTGTGGCAC AACTTCTATT TAAGCCCGCT GCATGTAGTG 
GCGGCGGAGT TTTTCGCTAA AACGCTTTAT CCACACCTGT TTGCCGACGT TTCACCACAG 
GATACGCTGC AAACTATTTA CCAGCAGTTT TTGCCGCTGG ATTTCACAGG AACTTTCTGG 
AGCCATTTGG ATAATGAATA A
 
Protein sequence
MRLLLLIFLL CTWAVSAKTI TDITGQRIEI PDNPQRIVLG ESRMLYTLAL LEPGYPAARV 
VGWPLDLKKY DPQSWALYTD KFPQMTHIPA LGSTGLRDIN PEKVLELAPD LVILPVLAKT 
THEEIALISL LKQAHIPVIR VDLRVDLLNH TIPSLRLLGE ALNRQDRAEA FISLYQSHMD 
RIHQRIAAYQ GPHPSVLLQL HLGRGDECCT TTLKGNLGQL LEFAGGNNIA AAQVKGVFGQ 
LSEEYVLARS PEIYIATGMA TAGSQAKTLA LGPQVSTAQA QESFRRVIAT QSKLQHLPAI 
QNGHAWGLWH NFYLSPLHVV AAEFFAKTLY PHLFADVSPQ DTLQTIYQQF LPLDFTGTFW 
SHLDNE