| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0805 |
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| Symbol | |
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| ID | 6087707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 916188 |
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| End bp | 918536 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641595866 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001719559 |
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| Protein GI | 170023054 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.637165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACCT TTCTCCCGAC TATTCGGTTT GACCATAGCC ACCACAAACT GGTGGTCCGC
GACAGCACCG CCGCCGTTGA TGTGCTGGGC TTTGAAGGCC ATGAAAGCCT GAGCCAGCCG
TTCTGTTACG ACATCCAATT CACCAGCGCC GACAAGGCGA TTGGCCCGGC GACCATGCTG
ATGCACGACG CGTCACTGAC ATTGGCGGCC CCGATGGCCG AAGCTTTTGG CGTGACGGTT
CAGCAGACCC AGCGGGTGAT CCAAGGGGTG GTCACCGGAT TTAAACGCCT GTCGGCCTCG
AAAGAGGAAT GCCGCTACGA ACTGAGCCTG CAACCGCGCC TGGCCTTGTT ATCGCGCAGC
CATCAGAACG GGATATATCA GGACATGTCG GTGCCGCAGA TTGTGGAAAA AATTCTGCGT
GAGCGCCATG ACATGCGCGG TCAGGATTTT GTCTTCACGC TGGCCCGCGA GTACCCACGC
CGCGAGCAGG TGATGCAGTA TGGCGAGGAT GACCTGACCT TTATCCGCCG CCTGCTGGCC
GAGGTGGGGA TCTGGTTTCG TTTTACCGTC GATCCCAAAC TCAATATTGA TGTGGTGGAG
TTTTACGACG ACCAGCGCTT CTATCAGCAA GGACTGACGC TACAGGCGGT GCCGCCTTCG
GGGATGCACG ACAGCGGGAT GGAATCGGTC TGGGACCTGT CCAGCGCCCA TCAGGTGGTG
GAAAAATCGG TCAGTACCGG CGATTACAAC TACCGCACCG CCACTGCCGA CCTGACCGCC
GGGGCCGACA TCACGCGCGG CGATACCACC ACCTACGGCG AAGCCTATCA TTACGCCGAT
AACTATCTGA CCGCAGGCAG CGAAGGGCGC GAGCCGGAAA GTGAAAGTGG GGCCTTTTAT
GCCCGTCTGC GCCATGAACG TTACCTCAAT AATCAGGCGC GCTTCGCCGG GGTGGCCAAT
GCGGCGGCAC TGGCACCGGG TCAGGAACTG AACGTCACCG GCAACGACGT GCCAGCACAA
TTTGGCAAAG GGGTGATAGT CACCCGCATC ACCAGCCACG CCCGCCGCGA CCGCAGCTAT
GAAGTGCATT TTGAGGCCAT CCCTTACTCC GAAGAGAATT GCTTCCGCCC GATCCTCATC
AACAAGCCAA AAATGGCCGG CACCTTGCCC GCACGGGTCA CCAGCACCAC GGTGAACGAC
ACTTACGGAC ACATCGACAA AGACGGCCGC TACCGTGTCA ATCTGATGTT TGACCGGGAC
AGTTGGGAGC AAGGTTACGA AAGCCTGTGG GTCCGTCAGG CCCGCCCGTA TGCGGGTGAC
AGCTACGGCC TGCACCTGCC GCTGCTGGCC GGCACCGAAG TGGCGATTGC ATTTGAGGAC
GGCAACCCGG ACCGGCCGTA TATCGCCTAT GTGCTGCACG ACTCGGTGCA CGGCGACCAC
GTCACCATCA GTAATTACAA ACGCAACGTA CTGCGCACTC CGTCGAACAA CAAACTGCGC
CTGGAGGATG AACGGGGCAA AGAGCACATC AAGCTCAGCA CCGAATACGG CGGCAAAAGC
CAGTTGAATC TGGGGCATTT GGTCGATAAC GAGAAACAGC CTCGGGGTGA GGGTTTTGAG
CTGCGCACCG ACAGTTTTGG TGTATTACGG GCAGAAAAAG GCCTCTTTAT CACTGCCGAC
GGACAGGCCA AAGCACAGGG GCAGGTGCTG GAGATGCAAC CGGCTATTGG CCTGTTGCAA
GGTGCTCAGG AACAGATGGA GGCCATCTCC GCGGATGCAC AAACCGCCAC CGCCAGTCCG
GCCGACCTGC AGGCACAAAT CAGTTTGTTA CAGCAAAATC TCACTGAACT GAAACAAGCT
GTCCTGTTAC TGAGTGCGCC AAAGGGGATC GCGTTGAGTA GCGGGGAGCA TCTGCAAATG
AGTGCCAGCG ATAACCTGAT TGCCACCGCC GGTAAAAATG CCGACGTCAG CGTCGCGAAA
AACTTCTTTA TCGGCGTAGG CAATACCCTA AGTATCTTCG TCAGAAAGCT GGGGATGAAA
CTAATAGCCA ATCAGGGGCC GATAACAGTC CAGGCGCAGA ATGATCTAAT GGAGTTATTG
GCGCGTAAAG CGATCACCAT TACCAGCACC GAGGATGAGA TAAAAATCAC CGCCAAGAAG
AGGATCACGC TGAATGCGGG AGGCAGTTAT ATCACGCTGG ATGAGAATCG GATCGAGTCA
GGAACGGCGG GGGAATATTT GACCAAAGCA GGGTATTACG GGCGGTTAGA TAAGGCCAAG
CTCCCAACTG AATTTCCAGC CTTAGCCGCT AAAACTGAAG ACCCCATTAA ACGTTGGCTA
TTCTCTTAA
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| Protein sequence | MNTFLPTIRF DHSHHKLVVR DSTAAVDVLG FEGHESLSQP FCYDIQFTSA DKAIGPATML
MHDASLTLAA PMAEAFGVTV QQTQRVIQGV VTGFKRLSAS KEECRYELSL QPRLALLSRS
HQNGIYQDMS VPQIVEKILR ERHDMRGQDF VFTLAREYPR REQVMQYGED DLTFIRRLLA
EVGIWFRFTV DPKLNIDVVE FYDDQRFYQQ GLTLQAVPPS GMHDSGMESV WDLSSAHQVV
EKSVSTGDYN YRTATADLTA GADITRGDTT TYGEAYHYAD NYLTAGSEGR EPESESGAFY
ARLRHERYLN NQARFAGVAN AAALAPGQEL NVTGNDVPAQ FGKGVIVTRI TSHARRDRSY
EVHFEAIPYS EENCFRPILI NKPKMAGTLP ARVTSTTVND TYGHIDKDGR YRVNLMFDRD
SWEQGYESLW VRQARPYAGD SYGLHLPLLA GTEVAIAFED GNPDRPYIAY VLHDSVHGDH
VTISNYKRNV LRTPSNNKLR LEDERGKEHI KLSTEYGGKS QLNLGHLVDN EKQPRGEGFE
LRTDSFGVLR AEKGLFITAD GQAKAQGQVL EMQPAIGLLQ GAQEQMEAIS ADAQTATASP
ADLQAQISLL QQNLTELKQA VLLLSAPKGI ALSSGEHLQM SASDNLIATA GKNADVSVAK
NFFIGVGNTL SIFVRKLGMK LIANQGPITV QAQNDLMELL ARKAITITST EDEIKITAKK
RITLNAGGSY ITLDENRIES GTAGEYLTKA GYYGRLDKAK LPTEFPALAA KTEDPIKRWL
FS
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