| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0801 |
|---|
| Symbol | |
|---|
| ID | 6091039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 910238 |
|---|
| End bp | 910924 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641595862 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001719555 |
|---|
| Protein GI | 170023050 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTC ACCTAACCGA ACACCCCCCA GTCGGGGATA TTGACGCCCT GTTACAGGAC
ACCTGGCTAC AGGTGATCAG CCTGCGTCAA GGGGTAACCT GTGCCGAGGG CGAAGGGCTG
GCATTCTGGC AGCGCTGTGT GGCGGACATT GAACGTGTCC ATCAGGCGCT GAAAGACGCC
GGTCACAGCG AGCAGAGTTG CCAGCACATC CGATACGCCC AATGTGCACT GCTGGATGAG
ACCGTGAAAG GGCGCGGTGT ACAGGATGAC GCCTACTTTG TGTGGTGTCA TTCGCCCTTA
CAGGCGCATT TTTTCAATAC CCTGGATGCC GGTAGCCAGC TTTACGAGCG GATGCGCGCC
GTGTTGCATG AGCCTGCGCC GGACAGCGCG GTACTGACCT GTTTTCACCG GGTATTGATG
TTGGGCTTCC TCGGCGGGTA CGCCTCCCCG GCGGCTTCTG AACGGGAGCA ACTGATCGAT
CAACTGAGCG TGCAGGTACC GGCGTTCAGT GTCGCGCCAT CCGGTGGGAT CCTGGCAAGC
GCCGCCTCCC GCAACCGGTT GGGGATCTGG CTGCGTTACT GGCCGGTACG GCTCGGGCTG
GCTGCGCTGA TGGTTGCGCT GTTGTGGTGG GGCCTTGATC ACTGGCTATC CGGTCTGTTA
ACCACCTTAC TGCCGGAGCC GGTGTAA
|
|---|
| Protein sequence | MNPHLTEHPP VGDIDALLQD TWLQVISLRQ GVTCAEGEGL AFWQRCVADI ERVHQALKDA
GHSEQSCQHI RYAQCALLDE TVKGRGVQDD AYFVWCHSPL QAHFFNTLDA GSQLYERMRA
VLHEPAPDSA VLTCFHRVLM LGFLGGYASP AASEREQLID QLSVQVPAFS VAPSGGILAS
AASRNRLGIW LRYWPVRLGL AALMVALLWW GLDHWLSGLL TTLLPEPV
|
|---|
| |