Gene YPK_0798 details

Gene Information

• Locus tag: YPK_0798
• ID: 6090097
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 906784
• End bp: 907284
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641595859
• Product: type VI secretion protein
• Protein accession: YP_001719552
• Protein GI: 170023047
• COG category: [S] Function unknown
• COG ID: [COG3516] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03358] type VI secretion protein, VC_A0107 family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.153288
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTCTT CAAGCTTCCA AAATGAGATA CCTAAAGCAC GCATTAACAT CAAATTAGAC 
CTGCATACTG GCGGGGCGCA AAAGAAAGTC GAACTGCCTT TGAAGTTGTT GGTGATGGGC 
GATTACAGCA ACGGTCAGGA GCAGCGCCCG CTGTCTGAAC GTGAAAAACT CAATATCAAT 
AAAAACAATT TTAACAGTGT GCTGGCTGAA TTCCAACCGA GCCTGAAACT CGCTGTACCG 
GACACGCTGG CCGGGGATAA CACCGATACA GCCGTCGCTT TGACCTTCCG CGAGATGAAA 
GATTTCGAAC CGGAAAGCGT CGCCCGTCAA ATCCCGCAAC TGCGCGCCTT GCTGGCGATG 
CGCAACCTGC TGCGAGACCT CAAATCCAAT CTGCTGGACA ACGCCACCTT CCGCCGTGAG 
CTGGAAAATA TCCTCAAAGA CGATGCCTTG AGCGATGAAC TGCGCGCTGA ACTGGCGGCC 
CTGGCACCAA AAGAGGGTTA A 

 

Protein sequence

MSSSSFQNEI PKARINIKLD LHTGGAQKKV ELPLKLLVMG DYSNGQEQRP LSEREKLNIN 
KNNFNSVLAE FQPSLKLAVP DTLAGDNTDT AVALTFREMK DFEPESVARQ IPQLRALLAM 
RNLLRDLKSN LLDNATFRRE LENILKDDAL SDELRAELAA LAPKEG