Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0789 |
Symbol | |
ID | 6090809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 897347 |
End bp | 898180 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 641595850 |
Product | intradiol ring-cleavage dioxygenase |
Protein accession | YP_001719543 |
Protein GI | 170023038 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAAACA AAATAATGCC AAAAGTTAAT CGCGAGGGGC GCAGATCATT CTTACAAAAA TCGATTGCTG TCGTTGCTAC CGGTGTAGTG ACCCGTGCAT TCTCTGCGCC GAATATTACA TTAGAGAAAG ATACCAAACC TCAACCTGGA ACATGTATTT TATCTGTTGA ACAAATGGCT GGCCCATATA TTAAAAGCAA TATGCCAATA AGAAGGAACA TAGCAGAAAA TGAAAACGGT GTGCCTTTAC TCCTTAAAAT AACAGTTATC GATTCAAATT CATGCCGCCC ATTAGAATAT TATTACGTTG ATATATGGCA ATGTAATGCT CGGGGGCGTT ATTCGGGATG GAGTTATGTT GACCCTGATA AAGACGCACC AAGTGGAGAA GTTGCGAGTA TCAACAGAAC TGATGAGAAA AGTTTTTTAA GGGGCTCACA GGTAACTGAT AGTCATGGGC TCGTCAGGTT TACCAGTATC TACCCTGGGT TTTATGCCGG GCGTGCTGTT CATATTCATT TTGCCATTAA GCCACCAAAA GCATCTCCTC AGGAGGTCGA TAAATACTCA TTTATTAGTC AGCTTTACTT CCCAGAAGAG TTCAATAGCG AAATAGAACA ACGGGCTGAA TATTCGCTGA GAAAAATCAA AAGGTTAATA AATAGTGATG ATGAAATATT TAACGAAGCA AATGGTGAAA ATGCAGTCCT TGCCGTGAGT AAAATCAATG AAAATGACAT TAATGATGGT GTTTTGGCGG AAATAACGAT AGCAATAAAT AAAGATATCT TGTCTAAAAG AATTGACCCT AAGGATATTT TAAAGATCAC ATAG
|
Protein sequence | MTNKIMPKVN REGRRSFLQK SIAVVATGVV TRAFSAPNIT LEKDTKPQPG TCILSVEQMA GPYIKSNMPI RRNIAENENG VPLLLKITVI DSNSCRPLEY YYVDIWQCNA RGRYSGWSYV DPDKDAPSGE VASINRTDEK SFLRGSQVTD SHGLVRFTSI YPGFYAGRAV HIHFAIKPPK ASPQEVDKYS FISQLYFPEE FNSEIEQRAE YSLRKIKRLI NSDDEIFNEA NGENAVLAVS KINENDINDG VLAEITIAIN KDILSKRIDP KDILKIT
|
| |