| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0770 |
|---|
| Symbol | |
|---|
| ID | 6087316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 874708 |
|---|
| End bp | 876789 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641595831 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001719524 |
|---|
| Protein GI | 170023019 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.163533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAAAGCC GTACCGATCC GGATGGCAGC CTGACCGAGT ACCTGTACGA CACCGAAGAA
CAGTTGATTG GGGTGAAAAA TCAGCGCGGT AAAACGTGGC AGCTCAAGCG TAACGCCGAA
GGGCGGTTAA TCGAAGAAGT GGATTACTGG GGGCAGAGCC GCGGTTATCA GTACAATGCG
GTTGGGCATT TAACCGGCAG TCACGATCCG CTAGGGCAGA TATTGGCGGT CACCTGCGAC
AAATTAGGGC GCATCACCGA GAAGAGCATT GCGGGTGATG AGCAGGCGTG GGAGCGCTAC
GAGTATAACG TTCAGGGCCA GCTTATCGGG GCGGTGAACC CGGCGGTGAC GGTGACGCGG
CGCTATAATC AGGACGGCCA GTTAGCGCAG GAAATTCAGC AGCAACCGCA GGTCAGTGCG
ACGGTGGAAT ATGGCTATAA TGCCGCCGGT CAGCAGGTTG AGCAGCGCCA TCTGTTGCAA
TATGCCGATG AGGACGACAT TCAGGTACAG CAACGGATCC GCTACGGCTA CGATGTGCTG
GGGCAGTGCA TCAGCCAGCA GATCGATGAT CACAGGCCGA TGGCGTTCAG CTACGACAAG
ATTGGCCGGT TAACCGAACA ACGGCTAACG CCGAGCCTGT CGCACCATCT CAGTTACAGC
GCTGCCGGGC AACTGGCGGG TTACCAGACA CGGCGCAAGG GCATGGTCTG GAGTGAAACC
GACTACTTCT ATGATCAGCA CGGCAATCTG ACGCAGCGGG AGGACAGCCG GCAGGGCAGT
GAGCGTTATC ACTACGATGT GCTGGGGCAG ATTGTGGGCT ATCAGGATCC GCTGGGGACG
CTGCATCGCT ACCGTTATGA TGCCTGCGGT GACCGGTTCA GCACGGTGGC TGACAATGCG
GAGGGCCGGC ACACGCAGCA CGATAATGGC ACCGCCTACC AGCTCGACAA GGCGGGGCAG
TTGGTATCGC GCACCGACCG GTTTAGCCAG TTAGCCCTGC GCTGGAATAC TTTTGGTCGG
CTGGCCGGCA TCAAAAATGA GCACCATGAT CACGCTTATA CCTACGATGC GCTGGGGCGC
CGGGTGGGCA AACGGCACCT TCAACGGCCG ACCAAACTGC TTGATGGGCT GCGGGTGATC
GACAAAGAGA CCCCCTCGCG CGGTGAACCG GTGTGGCAGG ATGAAACCTG GTTTATGTGG
GACGGTGACG TGATGGTGGG CGAGTTGCAG CGTGAAGTTG CCCCCCGGGT GGTGACGCCT
GAAACCTGGG ACAAACCGGA TGGTATCGTC TACAGCGGCC AGTTTTACGT GTATCAGCCA
GACAGCTTCG AACCCCGCGC CATGCAGCGT TATCAACAGG TTGCGGAAGC TGAAGACGGC
GAAATCGCGC CATTAGGCGA AGAGCAGATT TATTTCTACC AGAATGACCC GAACGGTATG
CCGATCCGCC TGCAGGATGG CGAAGGCGAA GTGGTGTGGG AAGCACAGTT CACCCCGTTC
GGGCAACTGA GTGTCACGGG TACCAGCCAG CTCCGCCAGC CGCTGCGCAT GCAGGGCCAA
TATTACGACA CGGAAAGCGG TTTACATTAT AACCGCTACC GTTATTATGA TCCGGCCTGC
GGTGTGTTTA TCAGCCAGGA CCCGATAGGG TTAAAAGGCG GATTAAATCC GTACCAGTTT
GCAGTGAATA CACTGGGATG GGTGGATCCG CTGGGGTTAG CTAAAAAAAC GAATGAGGCT
GGGGCATACT CTGAAGTAGG TGGTCATCAT GTTCATGCAC AAGCTGGATT TAAAAATGAG
CCTAATTACG ATAAGGGTAC CGCATTTGCT ATTGGTCAGG ATTACATGAA AGAAAAAGGT
TTGGATCACC AATCTATGAC CAATTCTCAA CGGCAAGGAT TTAAAGAATT AAATGAAAGT
GGTAGACCAA ATACTTTGGC TGAACATGAC AAAATTGCTA AAGATGCTTT AATAGCTGGG
GGGGCAACAG AAGAAGAAGC TAATGATTTA GTGAAAAAGT CCAAGGATAA TTTGAAATGT
CAAAATGTTT CTAAACCCAG CAATATCCCT TGGTATAGTT AA
|
|---|
| Protein sequence | MQSRTDPDGS LTEYLYDTEE QLIGVKNQRG KTWQLKRNAE GRLIEEVDYW GQSRGYQYNA
VGHLTGSHDP LGQILAVTCD KLGRITEKSI AGDEQAWERY EYNVQGQLIG AVNPAVTVTR
RYNQDGQLAQ EIQQQPQVSA TVEYGYNAAG QQVEQRHLLQ YADEDDIQVQ QRIRYGYDVL
GQCISQQIDD HRPMAFSYDK IGRLTEQRLT PSLSHHLSYS AAGQLAGYQT RRKGMVWSET
DYFYDQHGNL TQREDSRQGS ERYHYDVLGQ IVGYQDPLGT LHRYRYDACG DRFSTVADNA
EGRHTQHDNG TAYQLDKAGQ LVSRTDRFSQ LALRWNTFGR LAGIKNEHHD HAYTYDALGR
RVGKRHLQRP TKLLDGLRVI DKETPSRGEP VWQDETWFMW DGDVMVGELQ REVAPRVVTP
ETWDKPDGIV YSGQFYVYQP DSFEPRAMQR YQQVAEAEDG EIAPLGEEQI YFYQNDPNGM
PIRLQDGEGE VVWEAQFTPF GQLSVTGTSQ LRQPLRMQGQ YYDTESGLHY NRYRYYDPAC
GVFISQDPIG LKGGLNPYQF AVNTLGWVDP LGLAKKTNEA GAYSEVGGHH VHAQAGFKNE
PNYDKGTAFA IGQDYMKEKG LDHQSMTNSQ RQGFKELNES GRPNTLAEHD KIAKDALIAG
GATEEEANDL VKKSKDNLKC QNVSKPSNIP WYS
|
|---|
| |