| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0766 |
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| Symbol | |
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| ID | 6091192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 868402 |
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| End bp | 872802 |
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| Gene Length | 4401 bp |
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| Protein Length | 1466 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641595827 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001719520 |
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| Protein GI | 170023015 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.668703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATGC CAGCGGTAAA ACATTTTGAT CCGGTCATTG GGCTGGATGT CCATACGGTC
ATTATTCCTC CCTCACCGGT CCCTATCCCT ATTCCCCATC CCCATGTGGG ATTTGTGCTG
GATTTACGCG AGTGCGTTAA CGGCGTTAAA TCGGTGGTCG GTTCAATTGT GTTCAGTTTT
GTCGCTGAGG CTGCTGCTGA TGTGATGGAG GACAACCCTG AATTATTGGC GGCGGGTATG
GCGCTGGTCA GCAAGGCAGG GAGTGCACTG GAGGCCGCGG CGAATAATCC GGTAGTAAAA
ACCGGGCTGG CGTTAAAAGA TGCCAAAGAT CAGCTATCCG GGTTGAAAGC GGGCATTATC
GACACGCTGG GCGGCAATAT TGGCGGCGGC GGGGGGTCTA ACCGACCGGT AAAAGTGAAT
GGCACATTGC GCAGTACCGT CGGGACGCAC ACGTTTCATA TTCCGGGGCT GCATTTTCCC
CTCGGTGCCA TGTTCGCGCC GTTGATCCCC AGCAAAGATT CCGAATCTTT TATGGGCAGC
AAAACCGTTA TGGCCAACGG TGATCCGCTG TCTTATATGG CCCTACCCGC CATGAGTTGC
TGGTTTGTCG GCCTGCCCTC GACGCCGAAA AACGCAGCCC ATACCCAACG CAAGAGCCTG
TCGTTACCCA CCTCCGTCAT GTTGCCGATC CCGATGGGCC GCCCGGTGGT GGTGGGCGGC
ATGCCGGTGC TTAACCTGCT CGCCCTGATG ATGGGGCTGT TCAAGATATT TCGTGGATCC
AAGTTGGCGA AAAAGCTGGC CGAAAAACTG GGATTAAAAT CCGGCTTCCT GAAGTGCACC
ATTTTGGATG CGGAGCCGGT CAACTCGATC ACTGGCGAAG TGGTGGTTGA GCAGAACGAT
TTTGTGGTGG AAGGGCGCTT CCCGCTGGTG TGGGATCGCT ATTATGGCAG CCAGAAAGCG
GTGACTGGTG TCATTGGCCA GCGTTGGCAG TGCCCGGCAG ATATTCGGCT GGAGGTGTTG
GTCGATCAGG GCGAACTCGG CGTGGTGGCC CGCTTCCCGG ATCATGAAAC CGTCTTCTCG
CTGATGCCGA TAGAGCAGGG CTGGGATGAG CGGGTGTATG ACTGGCAGCA GGGGCACGCC
CTGTATCGTT CAGGTAACCA GTTGGTCCTG CGCACCCGCC GCGAGGAAGA GTATTTCTTC
ACGTTGCCCA ATGACTGGGA AAGCACGGTG ATCCCGTTTA CGGCGGCGGA TCGTCTGACG
TTGCCCATCC TGAGAATGGC TGATCGCTAT GGCAATGGCT GGCAATTCAA ACGGCAGGGC
AATTCGCTGT TGCTGGCGTT GTTCGAACTG ACACAAGGGT TGCTTTCGGG GCGTGAAGTG
CATGTCATTC AGGATGAAAA CACCCCCATC AGCGGGATGC TCAACGATTT TGTTCTCGTG
AATAAAACCA ATGGCGAGCG GCGTTTTCTG GTGGGCTACC GCCACGATGG CGAAGGTAAC
CTGATTGCCA CGCTGGATGC GGACAACCAT CCCTACCAGT TTGAATATAT CGCTGACAGC
CAAATGGTGC GCCATACCGA CCGCAACGGG CTGTCGTTTT ACTACCGCTA TCAGCGCCAC
AGCGACGGGC TGAACCGGGT CGAGCACGCC TGGGGTGATG GCGGGCTGTT CGATTACCGT
TTTCATTATG ATCGGGTCTA TCAGGAAACC CAAATCACCG ATTCATTGGG CCACACCACC
TTGCTGCGCT ACGACGAACG GGGGCTGCCG TTTGCCCGCG TCACGCCATT AGGCGGAGTT
TACAGTTATC AATATGATGC ACAGTGCCGG ACCATCGCCG AGATTGACCC GGCGGGCAAT
ACCCACGGCT GGGTGTACGA CCAATATGCC AACCTGACAG AAGAGACCTT TGCCGACCGC
AGCAGCGTGA AAACCGAGTA TGGCGATGAT CATAAACCGG TGCGCATTAC CGATCCCGGC
GGGCGCTTCT GGCGGCAGAG CTGGGATGCA CAGGGCAAGG TGATTTCGCA GACCACGCCG
GGCAAGATCG CCACCCATTT TACCTATGAT GACCTTGGGC AACTGGTGGC GGTGGTGGAT
GCTAGCCAGC AGCGCACGGA ACTGGCCTAT GATGCATGGG GCTTTTTGCG GGTCATTACC
GATGCGCGGG GTAACGCGAC GTCATTTAAG CATGATTTTT GCGGTAATCT GCTGAAAAAA
GTGGCGGCCA ATGGCGATAT CACCCGCTAT CAGTACGATA AAAAACAGCG GCTAACAGGC
TGTACGCTGC CCGATGCCAG AACCATCCGC TGTGAATATG ATCGGGAAGA TAATCTACTG
CTTTACAACG AGAACGGCTC ACGTATCACC CGCTTTGGCT ATTTTGGTCA GGGCCGGTTG
CAAAGCCGTA CCGATCCGGA TGGCAGCCTG ACCGAGTACC TGTACGACAC CGAAGAACAG
TTGATTGGGG TGAAAAATCA GCGCGGTAAA ACGTGGCAGC TCAAGCGCAA CGCCGAAGGG
CGGTTAATCG AAGAAGTGGA TTACTGGGGG CAGAGCCGCC GTTATCAGTA CAATGCGGTT
GGGCATTTAA CCGGCAGTCA CGACCCGCTA GGGCAGATAT TGGCGGTCAC CTGCGACAAA
TTAGGGCGTA TCACTGAGAA GAGCATTGCG GGTGATGAGC AGGCGTGGGA GCGCTACGAG
TATAACGTTC AGGGCCAGCT TATTGGGGCG GTGAACCCGG CGGTGACAGT GACGCGGCGC
TATAATCAGG ACGGCCAGTT AGCGCAGGAA ATTCAGCAGC AACCGCAGGT CAGTGCGACG
GTGGAATATG GCTATAATGC CGCCGGTCAG CAGGCTGAGC AGCGCCATCT GTTGCAATAT
GCCGATGAGG ACGACATTCA GGTACAGCAA CGGATCCGCT ACGGCTACGA TGTGCTGGGG
CAGTGCATCA GCCAGCAGAT CGATGATCAC AGGCCGATGG CGTTCAGCTA CGACAAGATT
GGCCGGTTAA CCGAACAACG GCTAACGCCG AGCCTGTCGC ACCATCTCCG TTACAGCGCT
GCCGGGCAAC TGGCGGGTTA CCAGACACGG CGCAAGGGCA TGGTCTGGGG TGAAACCGAC
TACTTCTATG ATCAGCACGG CAATCTGACG CAGCGGGAGG ACAGCCGGCA GGGCAGTGAG
CGTTATCACT ACGATGTGCT GGGGCAGATT GTGGGCTATC AGGATCCGCT GGGGACGCTG
CATCGCTACC GTTATGATGC CTGCGGTGAC CGGTTCAGCA CGGTGGCTGA CAATGCGGAG
GGCCGGCACA CGCAGCACGA TAATGGCACC GCCTACCAGC TCGACAAGGC GGGGCAGTTG
GTATCGCGCA CCGACCGGTT TAGCCAGTTA GCCCTGCGCT GGAATACTTT TGGTCGGCTG
GCCGGCATCA AAAATGAGCA CCATGATCAC GCTTATACCT ACGATGCGCT GGGGCGCCGG
GTGGGCAAAC GGCACCTTCA ACGGTCGACC AAACTGCTTG ATGGGCTGCG GGTGATCGAC
AAAGAGACCC CCTCGCGCGG TGAACCGGTG TGGCAGGATG AAACCTGGTT TATGTGGGAC
GGTGACGTGA TGGTGGGCGA GTTGCAGCGT GAAGTTGCCC CCCGGGTGGT GACGCCTGAA
ACCTGGGACA AACCGGATGG TATCGTCTAC AGCGGCCAGT TTTACGTGTA TCAGCCAGAC
AGCTTCGAAC CCCGCGCCAT GCAGCGTTAT CAACAGATTG CGGAAGCTGA AGACGGCGAA
ATCGCGCCAT TAGGCGAAGA GCAGATTTAT TTCTACCAGA ATGACCCGAA CGGTATGCCG
ATCCGCCTGC AGGATGGCGA AGGCGAAGTG GTATGGGAAG CACAGTTCAC CCCGTTCGGG
CAACTGAGTG TCACGGGTAC CAGCCAGCTC CGCCAGCCGC TGCGCATGCA GGGCCAATAT
TACGACACGG AAAGCGGTTT ACATTATAAC CGCTACCGTT ATTATGATCC GGCCTGCGGT
GTCTTTATCA GCCAGGACCC GATAGGGTTA AAAGGCGGAT TAAATCCTTA CCAGTTTGCG
GTGAATACAC TGGGATGGGT GGATCCGCTG GGGTTGAGTG GATGGAATAT TGATGGAGTT
CGGACAACTT CAATCCTTCA AGGAGGGCCT TTTAATGAAA AATATTATAA AGATAGTAAG
ACAGGTCTTT GGTGGTCAAA AGATACCCAT GGGCATGGTG GCTCAGCGTT TAAAGTATAT
GAAGAGACGT CAACATCTTT AGAATGGATT GCAGATGCTG ATCAAAATGG TGATTATCTA
GATGGTAAAC ATAAAGGTGA TACAGGAAAA AGTATTGATA AAAAGAAATG TAAAAATATA
TCTGTTAAGC GGAAGAAATA A
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| Protein sequence | MAMPAVKHFD PVIGLDVHTV IIPPSPVPIP IPHPHVGFVL DLRECVNGVK SVVGSIVFSF
VAEAAADVME DNPELLAAGM ALVSKAGSAL EAAANNPVVK TGLALKDAKD QLSGLKAGII
DTLGGNIGGG GGSNRPVKVN GTLRSTVGTH TFHIPGLHFP LGAMFAPLIP SKDSESFMGS
KTVMANGDPL SYMALPAMSC WFVGLPSTPK NAAHTQRKSL SLPTSVMLPI PMGRPVVVGG
MPVLNLLALM MGLFKIFRGS KLAKKLAEKL GLKSGFLKCT ILDAEPVNSI TGEVVVEQND
FVVEGRFPLV WDRYYGSQKA VTGVIGQRWQ CPADIRLEVL VDQGELGVVA RFPDHETVFS
LMPIEQGWDE RVYDWQQGHA LYRSGNQLVL RTRREEEYFF TLPNDWESTV IPFTAADRLT
LPILRMADRY GNGWQFKRQG NSLLLALFEL TQGLLSGREV HVIQDENTPI SGMLNDFVLV
NKTNGERRFL VGYRHDGEGN LIATLDADNH PYQFEYIADS QMVRHTDRNG LSFYYRYQRH
SDGLNRVEHA WGDGGLFDYR FHYDRVYQET QITDSLGHTT LLRYDERGLP FARVTPLGGV
YSYQYDAQCR TIAEIDPAGN THGWVYDQYA NLTEETFADR SSVKTEYGDD HKPVRITDPG
GRFWRQSWDA QGKVISQTTP GKIATHFTYD DLGQLVAVVD ASQQRTELAY DAWGFLRVIT
DARGNATSFK HDFCGNLLKK VAANGDITRY QYDKKQRLTG CTLPDARTIR CEYDREDNLL
LYNENGSRIT RFGYFGQGRL QSRTDPDGSL TEYLYDTEEQ LIGVKNQRGK TWQLKRNAEG
RLIEEVDYWG QSRRYQYNAV GHLTGSHDPL GQILAVTCDK LGRITEKSIA GDEQAWERYE
YNVQGQLIGA VNPAVTVTRR YNQDGQLAQE IQQQPQVSAT VEYGYNAAGQ QAEQRHLLQY
ADEDDIQVQQ RIRYGYDVLG QCISQQIDDH RPMAFSYDKI GRLTEQRLTP SLSHHLRYSA
AGQLAGYQTR RKGMVWGETD YFYDQHGNLT QREDSRQGSE RYHYDVLGQI VGYQDPLGTL
HRYRYDACGD RFSTVADNAE GRHTQHDNGT AYQLDKAGQL VSRTDRFSQL ALRWNTFGRL
AGIKNEHHDH AYTYDALGRR VGKRHLQRST KLLDGLRVID KETPSRGEPV WQDETWFMWD
GDVMVGELQR EVAPRVVTPE TWDKPDGIVY SGQFYVYQPD SFEPRAMQRY QQIAEAEDGE
IAPLGEEQIY FYQNDPNGMP IRLQDGEGEV VWEAQFTPFG QLSVTGTSQL RQPLRMQGQY
YDTESGLHYN RYRYYDPACG VFISQDPIGL KGGLNPYQFA VNTLGWVDPL GLSGWNIDGV
RTTSILQGGP FNEKYYKDSK TGLWWSKDTH GHGGSAFKVY EETSTSLEWI ADADQNGDYL
DGKHKGDTGK SIDKKKCKNI SVKRKK
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