| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0693 |
|---|
| Symbol | |
|---|
| ID | 6088959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 752537 |
|---|
| End bp | 753952 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641595754 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001719447 |
|---|
| Protein GI | 170022942 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3469] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAA AAAATGCAAA AAAATCACCG GTCCAACGAG TCGATATTAA AGATAAAAAA
ATATTTATGG GGTTCTGGCA CAATTGGACA TCCTATCCTA GAAATGGCTA TCAGTATGGC
CAGTCTACAA ATATACCGTT GGCCGATATT CCTAAAGAGT TCAATGTTAT TGCCGTCGCC
TTTATGAAGG GAAGCGGTAT CCCAACATTT AGACCGTATA ACGGGTCGGA TGAGCAGTTC
CGCACACAAG TGGATAAACT GCATAGTGAG GGCCGCTCAG TACTGATCTC CTTAGGGGGC
GCTGATGCAG AGATCTCATT AACATCCCAA GACGAGGCGG CCTTTGTCGC AGAGATTAAA
CGATTAGTTG ATGTCTATGG TTTTGATGGT TTAGATATCG ATTTAGAGCA GGCGGCAATT
AGTTATAAAG AAAACTCGAC GGTGATCCCT CGGGCATTAA AAACAGTAAA AGACTATTAC
GCTAACTTAG GCCAACACTT TATTATTAGT ATGGCACCCG AATTCCCTCA CTTAAGAATT
AATGAGGCAT ATGTTCCTTA TATTAAGGCG TTAGAGGGAT ATTATGACTT TATTGCACCA
CAATATTATA ATCAGTTGGG TGATGGCGTC CACACGGATA GCGGAGAGTT TATCGCTCAA
AGTGATAATG AGCGAAAAGA AGATTTTCTT TACTACTTAA CTAAAAATTT GGTTTCTAGT
TCTCAAAAAT TTATTAATAT CCCAGCAGAT AAATTTGTTA TGGGGTTACC GGCAAATAAT
GACGCGGCAA ATAATGGCTA TGTCATTGAT AAAAAAGATG TGCATAACGC CTTCGCCAGA
CTGGATGCCG CAGGTTTATC CATTCGAGGC CTGATGACCT GGTCAATCGA CTGGGACAAC
GGTAAAGATG TCCAAGGGAA AAGTTATAAT TGGGAGTTTA AAACACGCTA CGCCTCCCTG
GGTAATAATG ATGATGGCAG CAGTAATAAT AATCTCCCAT TGGCCCCCTA CAACCTTATT
CAAACTTCAA AAGCGGCGAA CAGCCTTGAA TTATCTTGGC AGCATACGCT TAATGTCAAT
GCTATCAGCT ATTACTCCAT TTTCCGTGAT GGCAATAAAG TAGGGACCTC GACGAATACA
ACCTTTACAG ATACCGGGCT AGAACCCAAT AAACAATATA TCTATAAAGT GAGCGCTACC
GACTCACAAG GGCAAATTTC TGATTTCAGT ACGGTGGTAA CGGCAACGAC GTTAACGACC
AACCTTTCAG TCTGGGAGAA AGGTCAATGG TACAACGATA ATGATTCGGT ACGACATAAC
GCAGAAAACT ATATTTGCGT CATGCAACAC ACCTCAAACG CATTCTGGTC ACCAGATCAA
GCCACCACAT TATGGCAGCT CGTCGTACAG CGCTAA
|
|---|
| Protein sequence | MSKKNAKKSP VQRVDIKDKK IFMGFWHNWT SYPRNGYQYG QSTNIPLADI PKEFNVIAVA
FMKGSGIPTF RPYNGSDEQF RTQVDKLHSE GRSVLISLGG ADAEISLTSQ DEAAFVAEIK
RLVDVYGFDG LDIDLEQAAI SYKENSTVIP RALKTVKDYY ANLGQHFIIS MAPEFPHLRI
NEAYVPYIKA LEGYYDFIAP QYYNQLGDGV HTDSGEFIAQ SDNERKEDFL YYLTKNLVSS
SQKFINIPAD KFVMGLPANN DAANNGYVID KKDVHNAFAR LDAAGLSIRG LMTWSIDWDN
GKDVQGKSYN WEFKTRYASL GNNDDGSSNN NLPLAPYNLI QTSKAANSLE LSWQHTLNVN
AISYYSIFRD GNKVGTSTNT TFTDTGLEPN KQYIYKVSAT DSQGQISDFS TVVTATTLTT
NLSVWEKGQW YNDNDSVRHN AENYICVMQH TSNAFWSPDQ ATTLWQLVVQ R
|
|---|
| |