Gene YPK_0659 details

Gene Information

• Locus tag: YPK_0659
• ID: 6090623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 718798
• End bp: 720693
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641595722
• Product: DNA topoisomerase IV subunit B
• Protein accession: YP_001719415
• Protein GI: 170022910
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.59712
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAT CCAGCTATAA CGCTGATGCC ATTGAAGTAC TCAGCGGTCT AGAACCAGTG 
CGTCGTCGTC CAGGAATGTA TACGGACACC TCGCGGCCAA ACCACCTCGG TCAAGAGGTG 
ATTGATAACA GCGTCGATGA GGCGCTGGCT GGTCATGCCC GTCGTATTGA CGTCATTTTA 
CACGCCGATC AATCACTCGA AGTGATTGAT GATGGCCGTG GGATGCCGGT TGATATCCAC 
CCAGAGGAGG GGGTTCCTGC TGTTGAACTG ATTTTATGTC GGTTACATGC GGGCGGTAAA 
TTCTCCAATA AGAACTATCA GTTTTCTGGT GGTTTGCACG GTGTGGGTAT TTCAGTTGTT 
AACGCTTTAT CCAAGCGGGT AGAAGTCACG GTACGCCGTG ATAGTCAAAT CTACAGTATC 
GCTTTTGAAA ATGGCGATAA AGTCCAGGAT TTACAGGTTA TTGGGACGTG CGGTAAGCGC 
AATACTGGCA CCAGTGTGCA TTTCTGGCCG GACGTCTCTT TCTTTGATAG CCCGCGTTTT 
TCGGTTTCTC GTCTATCCCA TTTACTGAAA GCCAAAGCGG TATTGTGTCC AGGCGTCGAG 
ATCGTTTTTA AAGATCAGGT CAACAACACA GAACAGCGTT GGTGTTATGC CGATGGTCTA 
ACCGATTATC TGATGGAAGC GGTTAACGGC TTTATTACTC TGCCAGAAGC ACCCTTTGTG 
GGGTCTTTTG CGGGTGATAC AGAAGCTATC GACTGGGCAT TACTGTGGTT GCCAGAAGGC 
GGCGAACTGC TGACTGAAAG CTACGTTAAC CTGATCCCAA CCATGCAGGG CGGTACCCAC 
GTTAATGGCT TGCGTCAGGG GTTGCTGGAT GCCATGCGCG ATTTCTGTGA ATACCGCAAT 
ATCTTGCCTC GCGGAGTCAA GCTCTCGGCA GATGATATCT GGGAACGCTG TGCTTATGTG 
TTATCGGTAA AAATGCAGGA TCCACAGTTC GCGGGTCAGA CGAAAGAGCG GCTCTCCTCA 
CGTCAATGTG CGGCCTTTGT CTCCGGTGTT GTCAAAGATG CCTTCAGCTT ATGGTTAAAC 
CAGAATGTGC AGGCCGCAGA ACAACTGGCT GAACTGGCGA TTTCCAGCGC TCAGCGTCGT 
ATGCGTGCAG CAAAAAAAGT GGTGCGTAAA AAACTGACCA GTGGCCCGGC ACTGCCTGGC 
AAACTGGCAG ATTGTACTTC GCAGGACTTG AGCCTCACAG AGCTATTTTT GGTGGAAGGG 
GATTCCGCCG GCGGTTCCGC GAAACAAGCC CGCGACCGGG AATATCAGGC GATCATGCCG 
TTGAAAGGCA AGATCTTGAA CACTTGGGAG GTCTCCTCTG ATGAAGTCCT GGCCTCGCAG 
GAAGTTCACG ATATTTCCGT GGCGATCGGT ATTGATCCTG ATAGCGAAGA CTTAAGCCAG 
TTACGTTACG GTAAAGTGTG CATTCTGGCG GATGCGGACT CCGATGGCCT GCATATTGCC 
ACGTTGCTGT GCGCACTGTT TGTGCGTCAC TTCCGGGCAC TGGTCCGTAA TGGTCATGTG 
TATGTGGCGA TGCCGCCGTT GTACCGTATC GATCTAGGCA AAGAGGTCTT TTACGCGCTG 
GATGAAGAAG AGAAAGCCGG TGTGCTTGAG CAACTGAAAC GCAAACGGGG TAAACCTAAC 
GTTCAGCGTT TCAAAGGGTT GGGTGAAATG AACCCATTAC AATTGCGTGA AACCACCCTC 
GATCCCAATA CCCGCCGTCT GGTGCAATTG ACCATCAGTG ATGATGATAT TGATCACACT 
CTGGCCGTTA TGGATATGTT GTTGGCAAAG AAACGCTCGG AAGATCGCCG CAACTGGCTA 
CAAGAGAAAG GGGATACTGC TGAGATCGAG GTCTGA 

 

Protein sequence

MTESSYNADA IEVLSGLEPV RRRPGMYTDT SRPNHLGQEV IDNSVDEALA GHARRIDVIL 
HADQSLEVID DGRGMPVDIH PEEGVPAVEL ILCRLHAGGK FSNKNYQFSG GLHGVGISVV 
NALSKRVEVT VRRDSQIYSI AFENGDKVQD LQVIGTCGKR NTGTSVHFWP DVSFFDSPRF 
SVSRLSHLLK AKAVLCPGVE IVFKDQVNNT EQRWCYADGL TDYLMEAVNG FITLPEAPFV 
GSFAGDTEAI DWALLWLPEG GELLTESYVN LIPTMQGGTH VNGLRQGLLD AMRDFCEYRN 
ILPRGVKLSA DDIWERCAYV LSVKMQDPQF AGQTKERLSS RQCAAFVSGV VKDAFSLWLN 
QNVQAAEQLA ELAISSAQRR MRAAKKVVRK KLTSGPALPG KLADCTSQDL SLTELFLVEG 
DSAGGSAKQA RDREYQAIMP LKGKILNTWE VSSDEVLASQ EVHDISVAIG IDPDSEDLSQ 
LRYGKVCILA DADSDGLHIA TLLCALFVRH FRALVRNGHV YVAMPPLYRI DLGKEVFYAL 
DEEEKAGVLE QLKRKRGKPN VQRFKGLGEM NPLQLRETTL DPNTRRLVQL TISDDDIDHT 
LAVMDMLLAK KRSEDRRNWL QEKGDTAEIE V