| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0634 |
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| Symbol | |
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| ID | 6090496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 691156 |
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| End bp | 692994 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641595697 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001719390 |
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| Protein GI | 170022885 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0230181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCAAA ACCCGCAGTC ACAGCTGAAG CTACTTGTCA CCCGAGGTAA GGAGCAAGGC
TATCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCGTCGA TTCCGATCAG
ATCGAAGACA TCATCCAGAT GATTAATGAC ATGGGCATAC AGGTACTAGA AGAAGCACCT
GATGCTGATG ATTTGATGCT GGCCGAAAAC ACCACGGATA CCGATGATGA TGCGGCTGAA
GCTGCTGCAC AGGTGCTTTC CAGTGTTGAA TCAGAAATCG GGCGAACCAC CGACCCGGTG
CGTATGTATA TGCGCGAAAT GGGTACCGTT GAGCTGTTGA CACGCGAAGG CGAGATTGAT
ATTGCCAAAC GTATCGAAGA CGGTATCAAT CAGGTTCAGT GTTCTGTTGC TGAATACCCT
GAAGCGATCA CTTATCTGTT GGAACAATAT GATCGTGTTG AAGCGGGCGA ATCTCGTTTA
TCTGACCTGA TCACTGGCTT TGTTGATCCA AACGCCGAAG AAGATATTGC CCCAACAGCG
ACCCACGTTG GTTCTGAATT ATCCACTGAA GAGATGGATG ACGAAGATGA AGACGAGGAT
GAAGACGACG ACGCAGAAGA CGATAACAGC ATCGATCCAG AGTTGGCGCG CCAGAAATTC
AGCGATTTGC GTGAGCAGTA TGAAAACGCG CGTATGGAAA TCAAGAAAAA TGGCCGCAAT
CACGCGAATG CTGCCGCTGA AATTCTGAAG CTTTCTGAGG TGTTCAAGCA GTTCCGTCTA
GTGCCGAAGC AGTTCGATTA TCTGGTCAAT AACATGCGTG CCATGATGGA TCGCGTTCGT
ACTCAAGAAC GTATCATCAT GAAGCTGTGT GTTGAGCAGT GCAAAATGCC GAAGAAAAAT
TTCGTTACGC TGTTTTCCAG CAATGAAACC AGCGACACCT GGTTTAATGC GGCAGTGGCG
ATGGGTAAAC CTTGGTCTGA AAAACTGAAA GATGTCTCGG AAGATGTTCA ACGCAGCTTG
CAGAAACTGC GCCAGATCGA AGAAGAAACC GGTCTGACCA TCGAGCAAGT AAAAGACATC
AACCGCCGTA TGTCTATCGG TGAAGCGAAA GCGCGTCGTG CCAAGAAAGA AATGGTTGAG
GCTAACCTGC GTTTGGTTAT CTCTATTGCC AAAAAATACA CCAACCGTGG TTTGCAGTTC
CTTGATTTGA TCCAGGAAGG CAACATTGGT CTGATGAAAG CAGTAGATAA GTTCGAATAC
CGTCGCGGTT ATAAGTTCTC AACTTACGCA ACCTGGTGGA TTCGTCAGGC TATTACTCGT
TCGATTGCAG ACCAGGCGCG CACTATCCGT ATTCCAGTGC ATATGATTGA GACCATTAAC
AAACTCAACC GTATCTCACG CCAGATGTTG CAAGAGATGG GCCGTGAGCC AACGCCAGAA
GAGTTGGCGG AACGGATGTT GATGCCGGAA GATAAGATCC GTAAAGTGCT GAAGATAGCT
AAAGAGCCTA TCTCCATGGA AACCCCGATT GGTGATGACG AAGATTCACA TCTGGGCGAT
TTCATTGAAG ATACCACTCT GGAGCTACCG CTGGACTCTG CAACTTCTGA GAGCCTGCGC
TCTGCCACGC ACGATGTGTT AGCTGGCCTA ACAGCCCGTG AAGCGAAAGT TCTGCGTATG
CGTTTCGGTA TCGATATGAA CACTGACCAC ACGTTGGAAG AAGTGGGCAA ACAGTTCGAT
GTCACCCGTG AACGTATTCG TCAGATCGAG GCGAAGGCAT TACGTAAACT GCGTCACCCA
AGCCGTTCTG AAGTGCTGCG TAGCTTCCTC GACGATTAA
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| Protein sequence | MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIVDSDQ IEDIIQMIND MGIQVLEEAP
DADDLMLAEN TTDTDDDAAE AAAQVLSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID
IAKRIEDGIN QVQCSVAEYP EAITYLLEQY DRVEAGESRL SDLITGFVDP NAEEDIAPTA
THVGSELSTE EMDDEDEDED EDDDAEDDNS IDPELARQKF SDLREQYENA RMEIKKNGRN
HANAAAEILK LSEVFKQFRL VPKQFDYLVN NMRAMMDRVR TQERIIMKLC VEQCKMPKKN
FVTLFSSNET SDTWFNAAVA MGKPWSEKLK DVSEDVQRSL QKLRQIEEET GLTIEQVKDI
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPTPE
ELAERMLMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTTLELP LDSATSESLR
SATHDVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP
SRSEVLRSFL DD
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