| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0561 |
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| Symbol | |
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| ID | 6090891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 614303 |
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| End bp | 617296 |
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| Gene Length | 2994 bp |
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| Protein Length | 997 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641595623 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001719317 |
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| Protein GI | 170022812 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAATT CAAATAGATC ACCAAAAAAC ATATCAAGAA ATTTTAAACA TCATAAAGAA
ACCTCCCTTT CAAGTAAAAA TAAAAGTCCT ATCGCAACAT GTGTCGCGGC GGCTCTCTTT
ATATTTGGCA GTTCATCAGT TATCGCGAAC CCGGACCATG AAGGTATCGT TGTGGGGAAA
TCAATCCTCA ATAAAAAGCA GAGTGCGGTA AATGCCATAA TAAATGAGGG TAACAGTTTA
GTACTCACTG ACAGTGCCAG CGCAGAGCAT ACGGCCGTTA ATACTGGCAG TATTTTTACG
TTAAAAGAGG ATAGTACAGC CGATATAACC TCGGTGACGG GGGGCTTTTT TAGTTTATCT
GGTAGCAGTA AAGCCAATAT AAATACGGTT CTTTCTGGAG GGTGGCTAGA GGTCAATGAC
GATGCAAGCA TCACCGAGAC AACGATCAGC TCAGATATCG AAAAAAAAAG TACTGTGCGC
TTATACCAAG ATGGAAGTGC CACAAAAACC ACTGTCGGTG ATAATGGTAT TCTCTATGTT
TCAGGTGATA GCCGTGCAGA AGAGACTCAT GTAACCAAAG GAGGAAAATT GATTGTTTAC
AGTGAGTCTC AGGGCCCGAC ACTGAAAAAC ACTCAAATCG CGGGAACATT AACCTTAAAA
AGTGATGTCA CACTGGAAGG TAAAACCGAG TTTGTCTCTA GCGCAACCAT AAAAACAACC
GGTCATTTAA TTGATAACCA GGGTCAACTT ATTTTCAATA GTGATAAAGA TATCGTTATT
GAAGCCATGA TCGATGGCCA AGGTTCATTA ACCAAAGAAA ATCCATTAAC CACATTAACG
CTATCTAGCG CGGGTGACGC GTGGGTTGCC AGTTATGTCT ATTCCGGTGA AACACATATC
AATGCAGGCA ATCTAAAACT CGCCAACACC CATTTTTTTG GTAGCCCGAT TAGTGGCAAT
CCAAATACAC GCCTTATTTT AGAAAAAAGC ACACTCGACA CCACCGTACA GGGCAGTAGT
GTATTTATCG ATAAACATAG CATATGGAAT ATGCAGGGTG ATTCTAACAT CCATCATTTA
GATATATTGG ATTCAGGGAG ACATGATTTA AATAACCCTG GAAAAACGGG CAATCAATTA
ATCATTAATG GCGATTACTT CAGTGATAAC GGCACGTTGA TTTTTCATAG TCAGTTAGCG
GGAGATGACT CCGTCACTGA CCACATACTG ATTAAAGGCA ATACGGGGGG CCATACCAAC
GTCCGAGTCA TTAATGTTAA CGGTGAAGGG AATAAAACAG ATTCAGGTAT CCAATTGATC
GAGGTGAGAG GGATATCGGA TGGGGAGTTT AGCCAGGTTG GCCGTATTAC CGCAGGGGCT
TATGAATACC GTTTAGGCCG TGGTAAGGAC GAACTCAGCA AAAACTGGTA TTTGAGCAGT
GATATTACGG ATTACTCTTC AGACGGTGTT CCCGAAGCAG AACTTCCAGG GATTTTGGTT
CTAAAATCAG ATAATGCCGC AGTCTTTTCA GCTAAATTAG CTGATTACGC GTTGCAAGCC
GTTGGCGGCG TGGTCGATTC CTTCACTCAA CCCGAGACTT CCCCCCCAAG TAACACCCCC
GAATTAACCG TTCCAGACCC AAAGCGCGCC AATGCCGCAG TCTTTTCAGC TAAATTAGCT
GATTACGCGT TGCAAGCCGT TGGCGGCGTG GTCGATTCCT TCACCCAACC CGAGACTAAC
ACCCCAAGTA ACACCCCCGA ATTAACCGTT CCAGACCCAA AGCGCGCCAA TGCCGAAGCC
TTTTCAGCCA AATTAGCTGA TTACGCGTTG CAAGCTGTTG GCGGTGTGGT CGACACTTTC
ACCTCACCTG AGCAAACTGA GCAAACTGAG CAAACTACTG CAACCCCAGA CAGCACACCG
AAATCAACCG ATTCAGCGGT GAAACCAGCA AGCACACCTA AACCAACCGA TTTAGCAGTG
AAACCCGCAA ACACCGTGAT CAGCAATGCC AAAACAGCCG CACCCAAACG CCAGACTTTA
GTTCATACCC CCGAAAACGG GAGCTACATT GCCAATATTG CAATGGCAAG AAACCTGTTT
ACCACTCGTT TAGAAGATCG CACCAGCCAT TATCTCTATA AAGATATCGT TACTGGGCAA
TGGCAGCCTA CCAGCATGTG GATGCATACC CAAGGCGGCA GAAGCCAGTT TGGTCATACT
GTTGAGCAAT TGAATATCAA AGGGAACTAC TACTCTGTTC AACTTGGTGG GGATATTGCT
CAATGGGCAA CCAATGAGCA AGGCAGTGGG CGAATTGGCA TGCTGGCAGG GTTAGGCAAA
GCCACTAACC ACAGCCACTC TAAGGTGACG AGCTACCATT CACGCGGTTC CGTTGATGGT
TACAACCTTG GCATATACGC AACTTGGTTC GCCGATCAGC AACATAATAC CGGCGTCTAT
ATTGATACTC TGGCGCAGTA TAGCTGGTTT AATAACGCCG TTAATGGGCA AGATAAAGCA
GAAGAAAAGT ATAAATCATC AGGTTTCACT ACCTCTATCG AGAGCGGCTA TACCTTTAAT
TTAGCGAATA GCGATCAACT GAGCTATTTC ATCCAACCCA ACGCACAAAT TACTTGGGCA
GGCATCAACA CACAAACACA TAAAACAGCC GACGGAGCGG TGGTCAGTTA CCGCAATAAC
GGGCATTTCA TCACTCGTAT CGGGGCTAAA GCGTATCTGC AAACGCATGA TACCCTGAAT
ACAAAATTCA CCCCTTTTGT TGCCGTAAAC TGGATTCACC AAAATCAAAA CACCGGCACC
ACAATTTCAG GCCAAGGGAT TGATAATAAG ATCCAAAACA GCACTGAATT CAACGTCGGC
GTTGAAAGCC AAATTGACCA ACAACTGCAT ATTTGGGCGA ATATAAATCA TCAAATAGGG
CGTTATAATT ATACCGATAC CAACGCACTG GTTGGCGTGA AATATCACTT CTAA
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| Protein sequence | MKNSNRSPKN ISRNFKHHKE TSLSSKNKSP IATCVAAALF IFGSSSVIAN PDHEGIVVGK
SILNKKQSAV NAIINEGNSL VLTDSASAEH TAVNTGSIFT LKEDSTADIT SVTGGFFSLS
GSSKANINTV LSGGWLEVND DASITETTIS SDIEKKSTVR LYQDGSATKT TVGDNGILYV
SGDSRAEETH VTKGGKLIVY SESQGPTLKN TQIAGTLTLK SDVTLEGKTE FVSSATIKTT
GHLIDNQGQL IFNSDKDIVI EAMIDGQGSL TKENPLTTLT LSSAGDAWVA SYVYSGETHI
NAGNLKLANT HFFGSPISGN PNTRLILEKS TLDTTVQGSS VFIDKHSIWN MQGDSNIHHL
DILDSGRHDL NNPGKTGNQL IINGDYFSDN GTLIFHSQLA GDDSVTDHIL IKGNTGGHTN
VRVINVNGEG NKTDSGIQLI EVRGISDGEF SQVGRITAGA YEYRLGRGKD ELSKNWYLSS
DITDYSSDGV PEAELPGILV LKSDNAAVFS AKLADYALQA VGGVVDSFTQ PETSPPSNTP
ELTVPDPKRA NAAVFSAKLA DYALQAVGGV VDSFTQPETN TPSNTPELTV PDPKRANAEA
FSAKLADYAL QAVGGVVDTF TSPEQTEQTE QTTATPDSTP KSTDSAVKPA STPKPTDLAV
KPANTVISNA KTAAPKRQTL VHTPENGSYI ANIAMARNLF TTRLEDRTSH YLYKDIVTGQ
WQPTSMWMHT QGGRSQFGHT VEQLNIKGNY YSVQLGGDIA QWATNEQGSG RIGMLAGLGK
ATNHSHSKVT SYHSRGSVDG YNLGIYATWF ADQQHNTGVY IDTLAQYSWF NNAVNGQDKA
EEKYKSSGFT TSIESGYTFN LANSDQLSYF IQPNAQITWA GINTQTHKTA DGAVVSYRNN
GHFITRIGAK AYLQTHDTLN TKFTPFVAVN WIHQNQNTGT TISGQGIDNK IQNSTEFNVG
VESQIDQQLH IWANINHQIG RYNYTDTNAL VGVKYHF
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