Gene YPK_0505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0505 
Symbol 
ID6089986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp556360 
End bp557793 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content49% 
IMG OID641595567 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001719261 
Protein GI170022756 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GTCTGCAACT CAAGTTCAGC CAACAACTGG CGATGACTCC GCAGCTTCAG 
CAAGCTATTC GCTTGTTGCA ACTTTCGACG CTTGAACTCC AGCAGGAGAT TCAGCTCGCG
CTGGAGAGCA ACCCCCTTCT TGAGCAAACG GACCTTCATG AAGAGATAGA TGCTAAGGAA
ACCGTGGACA GTGAATCGCT GGATACCCGC GAAGCACTAG AACAAAAGGA TATGCCGGAA
GAATTACCGC TAGATGCCAC CTGGGATGAG ATTTACACCG CAGGTACCCC ATCCGGCATG
GGCAATGATT ACAGTGACGA TGAACTGCCC GTCTATCAGG GTGAAACCAC CCAAACACTG
CAAGACTATC TGATGTGGCA GGTGGATTTA ACACCGTTCA CTGAGACCGA CGCCGCCATT
GCGACTTCTA TCGTTGACGC TGTTGATGAC ACTGGCTATC TCACTGTGCC GCTGGAAGAT
ATTCTGGAAA GCATGGGTGA TGAGAACGTA GCGCTAGACG AAGTGGAAGC GGTACTCAAA
CGTATTCAGC ATTTTGATCC CATCGGTGTC GCTGCCCGTA ACTTGCGCGA ATGCTTACTG
GTACAGTTAT CACAATATGC CAAAGACACC CCTTATTTGG CCGAAGCGCG TCTGATCGTC
AGCGAATATT TAGATTTGCT AGGCAACCAT GATTTCCGCA TGATGATCCG CTTGAGTCGG
CTGAAAGAAG ATACACTTAA AGAAGCCATC GCGCTGATCC AATCACTGGA TCCACGGCCA
GGTCAGTCGA TCAATACCGG GGAGTCTGAG TATGTCATCC CGGATGTTCT GGTTCGTAAA
GAGAAAGGTA TCTGGACGGT GGAGCTGAAT GCCGATAGCA TCCCACGTCT AAAAGTTAAC
CAACAATACG CAGCGATGGG CAATAGCGTC CGTAATGACA GTGACGGGCA GTTTATCCGT
AGCAATTTGC AAGAAGCAAA ATGGTTGATC AAAAGCCTTG AAAGCCGCAA CGAAACGCTG
CTAAAAGTAG CAAGATGTAT TGTAGAACAG CAAGTCGAGT TCTTTGAGAA AGGTGCAGAG
TTTATGAAAC CCATGGTACT GGCTGATATC GCCCAGGCTG TGGATATGCA TGAATCAACA
ATCTCTCGAG TGACCACGCA GAAATTCTTG CACAGTCCCC GAGGGATTTT TGAACTGAAG
TATTTCTTCT CTAGCCACGT CAATACCGAT AGTGGGGGCG AAGCCTCTTC TACGGCGATC
CGGGCGCTGG TGAAGAAATT AGTGGCGGCA GAAAACCCTG CCAAGCCATT AAGCGACAGT
AAACTAACCA CTTTATTATG TGAACAAGGC ATTATGGTAG CACGGCGCAC CGTCGCAAAA
TACCGAGAGT CGTTATCCAT CCCTCCGTCT AATCAACGTA AACAGTTGGT TTGA
 
Protein sequence
MKQGLQLKFS QQLAMTPQLQ QAIRLLQLST LELQQEIQLA LESNPLLEQT DLHEEIDAKE 
TVDSESLDTR EALEQKDMPE ELPLDATWDE IYTAGTPSGM GNDYSDDELP VYQGETTQTL
QDYLMWQVDL TPFTETDAAI ATSIVDAVDD TGYLTVPLED ILESMGDENV ALDEVEAVLK
RIQHFDPIGV AARNLRECLL VQLSQYAKDT PYLAEARLIV SEYLDLLGNH DFRMMIRLSR
LKEDTLKEAI ALIQSLDPRP GQSINTGESE YVIPDVLVRK EKGIWTVELN ADSIPRLKVN
QQYAAMGNSV RNDSDGQFIR SNLQEAKWLI KSLESRNETL LKVARCIVEQ QVEFFEKGAE
FMKPMVLADI AQAVDMHEST ISRVTTQKFL HSPRGIFELK YFFSSHVNTD SGGEASSTAI
RALVKKLVAA ENPAKPLSDS KLTTLLCEQG IMVARRTVAK YRESLSIPPS NQRKQLV