| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0403 |
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| Symbol | |
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| ID | 6090953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 442267 |
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| End bp | 446439 |
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| Gene Length | 4173 bp |
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| Protein Length | 1390 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641595467 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001719161 |
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| Protein GI | 170022656 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAAG CGGCCCGTGT TGATGACAAG CTTTATCATT CCAGTGCCTT AGCGGGTTTT
ATTATTGGCT CCATTATTGG TGCCGCCGTG ATTTTTGCGG CCGCGGCTTA CGCCGCCTCC
ATTGTTCTCA CCGGCGGGGC GACGCTGGTC GCTACCGGCT TTATTGTGGG TATGGGGGTG
ACCACGCTGG GCGTCGTTGC CGGTGGGTTA ATACGCTCCG TGGGCGAAAA AATAGGGAGC
ATGTGCCATC ACGATGTCGG ACAAATTACG ACAGGGTCCA AAAACGTTAA AGTGAACAGT
AAACGGGCGG CGCATGTCGA GCTCAGTACC GTGGCCTGTA AAGATGACTC CGCCATTCAG
CGCATGGCCG AAGGTTCGTC AAATATCTTT ATTAACAGTA AAGCCGCCGT TCGTCTGGAA
GATAAAACGA CCTGTGATGC GGTTGTCGAT TCCGCTTCCA GCAATGTGAC GTTTGGTGGG
GGGCGCGTTC AGTATCTCGA TATTAAACGC GAGATTTCTG ATGAAATGCG TGATTTGTCA
GAGAAGCTGT TTATTGTCGC CGGGCTGGCG GGCGGCATAT TTGGGGCGGC AAAACAGGCG
GGGTGTTTCG GCCTTAAATG CCTGAGCAAG ATTGCGTTGG GTGAGATGGC CGGGGCGGCT
GCCGGGTATG GGCTGGAAAA AGGGGTTGGG GCCATCGCCG GTTATTTCGG TTACCCGGTT
GATGTGATCA GTGGACAGAA ATTGCTGACA GGTGAGGGCG ATGATACCGA TTTTATTCTG
CCGGGTATCT TCCCGCTGCA CTGGAGCCGG ATTTATCGCA GTGAAAATCA CCATGTCGGG
GCGCTGGGAC AAGGCTGGTC TCTGGTATGG GAGCGTTCAT TACGCAAAGA AGATGACAGC
ATTGTTTATC AGAATGATGA AGGTCGGGAG ATTGTCTTTC CCCTGATTAA ACGTGGAGAG
CGCTATTTCT CCCCCACGGA GCATATCTGG CTGGCACGTA CCGAGCGTGA TACCTATGCC
ATCAGCAGCC CGTTTGAAAC CTGTTTTATT TTTGAGGCCT TTTCTGAGGC TGGCGTTGCG
AAATTAGCCA GCCTCGAAGA TCTCAATGGT CATGCCCTGT ATTTCTCTTA TGACGATATC
GGGCAACTGA AAAAAATATC GACCACCAGC GGTTATGGGG TGTATTGCCA GTATGAAAAA
GGGCGTCTGG TGTCCGTTGC CTGCGTCAAG GGCGGTACGC CGGGCACACT GGTCCGCTAC
CAGTATAATG AACAGCACCA GTTGGTCAGC GTCACTAACC GTGAGGGGCA AATCACCCGC
CAGTTTGGTT ACCATGGCCA TCTGATCAAC AAACTGGCGG ATGTCAGGGG GCTGGAGTGC
CGTTACACAT GGGCTGATAT CGGCGGAACC CCGCGAATTA CGCACAGTGC CACCAATCTG
GGGGAGCAGT GGCAGTTTGA TTATGATATC GACAATCAAC AGACCACCCT GACGGACCTC
AATACCGGGC AGACCGCCTG CTGGGGATAT AACGCCCAAC ATTTAATTAC CGACTATCGG
GATTTTGATG GCGGGAAATA TGCATTTGAC TACAACGACC TCAATATGCC GGTACGCGTT
GTGCTGGCAG GCGAGAGAAC GCTCGTTCTG GTTTACGATG CACTGGCGCG CCCGATCCAG
ATCACCGATC CGCTAAAACG TGAAACCCAC ATTGATTATC ACCGTAACAG TCTGCGGGTG
GTGCGCCGTC AGTACCCTGA CGGGCAGGTC TGGAAGGGGG AATATGACCG TACCGGCCGT
TTGCTGAAAG AGAACGCGCC GGATGGCGGG GTGACGCTTT ATCATTATCC AGGGGCCTCA
TCCCTTCCTG AACGCATAAC CAATGCCGTA GGGGCGCAGA CACACCTTGG TTGGGAAAGG
CACGGGCAAC TGACGGAGCA CACCGACTGC TCGGGTAAAC TGACCCGCTA CGAATATGAT
ATCGATGGCC ATCTGCTGAC GGTCATCGAT GCTGAAAACC ATTCAACACA TTACAGCTAC
AACCGTCTCG GGCAGCCCAC CGGGGTCAGG TACGCCGATG GCCGCAAAGA GCAGTTGCGG
TATAACGCTC AGGGGCTGGT TGAACAGTTT ACCGATCCTG TCGGGCGGCA GTTGCACTGG
CGTTATAACC TGCGGGGTCA GCCGGTCAGC TTTACTGATC GTCTGCAACG GGAATACCGT
TACCGCTATG ACTGCCATGG GCAGATGATT GAGCTGGATA ATGCCAATGG TGGCCAGTAT
CACTTCCGGT GGAGCAGTGG CGGGCAATTG GTGGAAGAGC AGTATCCCGA TAACCTTGTC
CGGCGTTATC GCTATGGGGA GAGCGGGATG CTGATGGCGC TGGAGACCAC CGCGCCCACG
GTTGACGATC TTACCGTCTC CCGGCAGGTC AGTTTTGACT ATGATGCGGG CGGGCGAATG
ACGCAGCGCC TGACGGGCAT GAGTGCGACC CGGTATGACT GGGACATTAT GGACCGTTTA
TTGTTGGCCG AGCGTGTGCC AACGGCGGTG GGCGAACAGG CGGGGATCGT CGGTCATGGT
GTTCGTTTGG CGTATGACAA GGCCGGGCAT TTACTGACGG AAAGCGGTGA CCTGGGTGCG
GTGACGTATC AGTGGGATCC GCTGCATCAT CTGGCCGCCC TGACGCTGCC CGATGGTCAG
ACGCTGTCAT GGTTGCGTTA CGGTGCGGGC CATGTCAGTG CCATTCGTCA TGGTGATACG
CTTATTTCCG AGTTCAGCCG GGATAATCTT CATCGGGAAG TGAGCCGGAC CCAGGGTATT
TTGACGCAGT ATCGTGATTA TGACGCGATG GGGCGGCGGT TGTGGCAATC GGCGGGTTCT
GATGCGCCGA CAGTGGCGGC CGATCTGCTG CCCCGTCAGG GGGATATCTG GCGTAAATTT
AGCTTTGACA CTGCCGGTGA ACTGAGCATG GCCACCGATT TTATCCGGGG TGAGCAGCAG
TACCGTTATG ATGCGGAAGG GCGGCTGACT GACAGCCGGG AGCGTCATCA GTTATCCGTT
GCGGAGGATT TTGCTTACGA CAATGCGGAT AACCTGCTGA ACCTGAGGAA ACTGCCGTTT
GACACGGTCG ATCCACTGTA CGATACACCG GTCGCCAACA ACCGTTTGAC GCAATGGCAG
CATTACCGTT TTGAGTATGA TGCCTGGGGA AACATCACCA CGCGGCATGC CGGTGGTCGG
ATGCAACATT TTGCCTATGA CGATGATAAC CGGCTGCTGC GGGCCTGGGG AACCGGGCCG
TTAGGGGAGC ATGACAGCCA CTATCGGTAT GATGCGCTGG GGCGGCGTAT CCACAAATCG
GTGACGATAA AGCGCGGCGC AGAAAAAACC ACCCGTCAGA CCGATTTTAT CTGGCAGGGG
TTGCGGTTAT TGCAGGAGCA ACATGCGGAC GGCAACGCGA CCTATATTTA CGACCCGAAC
GAAAGTTATA CGCCGCTGGC GCGGGTCGAT CAGCGTCATG GCGAGACAGA AAGTCAGGTG
TATTATTTTC ATACGGATAT CAACGGTACC CCGCTGGATG TCACGGACGG AGAGGGTAAG
CACCGCTGGT CAGGGAAATA CCACGCCTGG GGCAAAGTTA CCCGGCAGAA TGTCAGCGAT
CCAAGGCAAA GCACGGTCAG CCGGTTCGCG CAGCCGCTGC GTTATCCGGG GCAATACAGT
GATGACGAGA CGGGTTTGCA CTACAATACG TTCAGGTACT ATGACCCGGA GATAGGGCGA
TTTAGTACGC AGGACCCGAT AGGGCTGGCG GGGGGGGTGA ATCTTTATCA GTATGGGCCA
AATCCGCTAG GTTGGGTGGA TCCTTGGGGC TTGGCTACAT ATACATCATA TGAGCAAGCA
AGAAATGCAG CTCTAAAATG GCTACAAGAT AGAGGGTTTA AGGCTGAAAC TGAAAATCTT
GGTCGTTTTG GTGATATAAA AGGCAAACCT GTTGGAATGC AAACGGGCAA TGGAAAAGTT
GGATTTAGGG TCGAGTTCGA TGAGCGAAGT GGGGCTCATA TTAATACATG GTCAGGTAAG
GAAAAAGGTC CTCATTTCCA ATTTGAAGCA AGTGAGAAAA CTGTTAAAAA AATTCAAAAA
GGATTTGATA AAAAAACGAA TGGAAGGTGC TAA
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| Protein sequence | MFEAARVDDK LYHSSALAGF IIGSIIGAAV IFAAAAYAAS IVLTGGATLV ATGFIVGMGV
TTLGVVAGGL IRSVGEKIGS MCHHDVGQIT TGSKNVKVNS KRAAHVELST VACKDDSAIQ
RMAEGSSNIF INSKAAVRLE DKTTCDAVVD SASSNVTFGG GRVQYLDIKR EISDEMRDLS
EKLFIVAGLA GGIFGAAKQA GCFGLKCLSK IALGEMAGAA AGYGLEKGVG AIAGYFGYPV
DVISGQKLLT GEGDDTDFIL PGIFPLHWSR IYRSENHHVG ALGQGWSLVW ERSLRKEDDS
IVYQNDEGRE IVFPLIKRGE RYFSPTEHIW LARTERDTYA ISSPFETCFI FEAFSEAGVA
KLASLEDLNG HALYFSYDDI GQLKKISTTS GYGVYCQYEK GRLVSVACVK GGTPGTLVRY
QYNEQHQLVS VTNREGQITR QFGYHGHLIN KLADVRGLEC RYTWADIGGT PRITHSATNL
GEQWQFDYDI DNQQTTLTDL NTGQTACWGY NAQHLITDYR DFDGGKYAFD YNDLNMPVRV
VLAGERTLVL VYDALARPIQ ITDPLKRETH IDYHRNSLRV VRRQYPDGQV WKGEYDRTGR
LLKENAPDGG VTLYHYPGAS SLPERITNAV GAQTHLGWER HGQLTEHTDC SGKLTRYEYD
IDGHLLTVID AENHSTHYSY NRLGQPTGVR YADGRKEQLR YNAQGLVEQF TDPVGRQLHW
RYNLRGQPVS FTDRLQREYR YRYDCHGQMI ELDNANGGQY HFRWSSGGQL VEEQYPDNLV
RRYRYGESGM LMALETTAPT VDDLTVSRQV SFDYDAGGRM TQRLTGMSAT RYDWDIMDRL
LLAERVPTAV GEQAGIVGHG VRLAYDKAGH LLTESGDLGA VTYQWDPLHH LAALTLPDGQ
TLSWLRYGAG HVSAIRHGDT LISEFSRDNL HREVSRTQGI LTQYRDYDAM GRRLWQSAGS
DAPTVAADLL PRQGDIWRKF SFDTAGELSM ATDFIRGEQQ YRYDAEGRLT DSRERHQLSV
AEDFAYDNAD NLLNLRKLPF DTVDPLYDTP VANNRLTQWQ HYRFEYDAWG NITTRHAGGR
MQHFAYDDDN RLLRAWGTGP LGEHDSHYRY DALGRRIHKS VTIKRGAEKT TRQTDFIWQG
LRLLQEQHAD GNATYIYDPN ESYTPLARVD QRHGETESQV YYFHTDINGT PLDVTDGEGK
HRWSGKYHAW GKVTRQNVSD PRQSTVSRFA QPLRYPGQYS DDETGLHYNT FRYYDPEIGR
FSTQDPIGLA GGVNLYQYGP NPLGWVDPWG LATYTSYEQA RNAALKWLQD RGFKAETENL
GRFGDIKGKP VGMQTGNGKV GFRVEFDERS GAHINTWSGK EKGPHFQFEA SEKTVKKIQK
GFDKKTNGRC
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