Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0398 |
Symbol | |
ID | 6090107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 433181 |
End bp | 434569 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641595462 |
Product | type VI secretion-associated protein |
Protein accession | YP_001719156 |
Protein GI | 170022651 |
COG category | [S] Function unknown |
COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATCA CGTCACAACA TCCCTGGCAT GTCTTGTTAC AAGCCCCTTT GTCACCTGAG CAGACCGCAC AAGCCCTGGC CGATGATGAC CCCCAATGGG AATATATCGA CGGCCAGATG GTGAAACTGG GGTCATTGGC CCACGCCACG CTGAATATTG ATGATATTCA GCAACAAGCC ATGGCGCTGT TATCACAGAA AAGTAAAGAC TTCCGGCTCG TGGTGCATCT ACTGCGCACC CTACAACACG GGGGCCAGCC AGATGAATTG ATGCTGGCGA TGTCATTGCT GACTGAATAC GTCCAGCTAT TTTGGACTAC GGCCTGGCCG CAAAATCCTT TACACAAACG GCGCTTTGCT CAACAAATCC TAAAACGCTT TGACAGCGCC AGCAGCAGTT TTAGCCAGCG AGCGGACGAG GCTCAACGTG AGAATGTGCA AGGATTATTG GCACATTTAG CACAGGTTTG GCATAGCCGT GAGCCGGGTC TGGCTAAAGA GGTGGATGCA TTACGCAGCC GCTATGCGCG GCCACCGGAG CGGGTTATCG AGGCAGTGGC TTCTGATGAA CCGCTCTCAT CCAACACCTT GGCGGCGGCA ATGGCCACCA CCCCCGTTAG CCCAAGCCTC GCCATAGATA ACACGAGCGA CAGAGCCTGG CGGCAGACCT TGCTGAAAAT GGCGGATTTA CTCAGCGAAC AGCAACCCGA TGCCGCTATC GGTTTCCGGC TACGCCGCCA TGCCGTATGG GGCGCGTTAA CCGCGCCACC TATGGCGCAG AGCGATGGCC GCACTCCGTT GGCCGCAGTT TCTGCGGATC GAACCGCCGA TTACTTAGCA CGTCTGGCTA ATGCCGATTT GCCTTTGTGG CACCAAGTGG AGCAGAGCCT CACCCTCGCG CCTTATTGGC TGGATGGACA TGTGCTTTCG GCACAAATCG CCCTGCAACT GGGTTATGAC GCGGTGGCAC AGGCTATCCG TGATGAACTC AGCGTTTTTT TAGCCCGTAT TCCCGCATTA AAAACCCTCT TTTTTACGGA TATGACGCCA TTCCTCTCCT CTGAATCTGC CGCCTGGTTA CAGCAGGATG CGAATCATCA GGGAAGAAGT CGCACTATTG AACAGGATGA AATTTGGCAA TGCTATCAAC AGCAAGGATT GGAAGCCGCA CTACAGATGA TAAACCGGCA ACCACAGCAA TCCGAACCTC GGGACCGTTT TTACCATCAA TTGCTCAGTG CACAGTTGTT CGAAAAAGCA GGGTTAACCG CATTGGCACA GCAGCACTAC CACAGCTTAT TACTGGTGGG GCAGCAATTA CAGCTAAGCG AATGGGAACC TGCGTTGATC GCTCTACTGA CAGAAAAACA GCGACAACTC AAACCATGA
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Protein sequence | MDITSQHPWH VLLQAPLSPE QTAQALADDD PQWEYIDGQM VKLGSLAHAT LNIDDIQQQA MALLSQKSKD FRLVVHLLRT LQHGGQPDEL MLAMSLLTEY VQLFWTTAWP QNPLHKRRFA QQILKRFDSA SSSFSQRADE AQRENVQGLL AHLAQVWHSR EPGLAKEVDA LRSRYARPPE RVIEAVASDE PLSSNTLAAA MATTPVSPSL AIDNTSDRAW RQTLLKMADL LSEQQPDAAI GFRLRRHAVW GALTAPPMAQ SDGRTPLAAV SADRTADYLA RLANADLPLW HQVEQSLTLA PYWLDGHVLS AQIALQLGYD AVAQAIRDEL SVFLARIPAL KTLFFTDMTP FLSSESAAWL QQDANHQGRS RTIEQDEIWQ CYQQQGLEAA LQMINRQPQQ SEPRDRFYHQ LLSAQLFEKA GLTALAQQHY HSLLLVGQQL QLSEWEPALI ALLTEKQRQL KP
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