| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0385 |
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| Symbol | |
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| ID | 6089967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 418592 |
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| End bp | 419110 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641595449 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001719143 |
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| Protein GI | 170022638 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACTC CAGCTTATAT CTCTATCACA GGGAAAACGC AGGGCAATAT TACCGCAGGT
GCTTTCACAG CTGAATCCGT CGGTAATATC TATGTTCAAG GTCATGAAGA CGAAATGTTG
GTACAGGAGT TTGAGCACAT TGTGACGGTG CCTACCGACC CTCAATCCGG CCAGCCTTCC
GGCCAACGTG CGCACAAACC ATTGCGTTTC ACTGTTGCGT ACAACAAAGC CGTTCCATTG
CTGTATAACG CATTAGCCTC TGGTGAAATG CTGCCAACAG TGGAATTGAA GTGGTACCGC
ACCTCGATTG AAGGCAAACA AGAGCATTTC TTCACGACTA AACTGGAAGA TGCCACCATT
ATCGACATTG ATTGTAAAAT GCCGCATTGC CAGGATTCCA CCAAGGCTGA GTTTACTCAA
TTAGTCCGTG TATCACTGGC ATACCGCAAG ATTAACTGGG ATCACACCAC CGCGGGCACC
TCTGGTGCTG ATGACTGGCG TGCGCCGATC GAAGCGTAA
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| Protein sequence | MPTPAYISIT GKTQGNITAG AFTAESVGNI YVQGHEDEML VQEFEHIVTV PTDPQSGQPS
GQRAHKPLRF TVAYNKAVPL LYNALASGEM LPTVELKWYR TSIEGKQEHF FTTKLEDATI
IDIDCKMPHC QDSTKAEFTQ LVRVSLAYRK INWDHTTAGT SGADDWRAPI EA
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