Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0319 |
Symbol | |
ID | 6087653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 340887 |
End bp | 341426 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641595379 |
Product | DNA topoisomerase type IA Zn finger domain-containing protein |
Protein accession | YP_001719085 |
Protein GI | 170022580 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.020229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAAGA AAGTTATTAC TAAGGATAAT GGATCTTGTC CTGAGTGCGG GTCAGCGTTG GTGATTCGCA GTGGGGGGCA CGGTCCATTC CTTGGTTGTT CACATTATCC AGATTGCCAG TATATACGCC CACTAAAAGC GCAGGCTGAC GGGCATGTTG TGAAAACTCT GGAAGGGCAA CCTTGTCCTG AGTGTGGTTC GGATATGGTG CTACGCCAAG GCCGCTTCGG TATGTTTATT GGTTGCAGCC AATATCCACA GTGTGATCAT ACAGAAGTTA TAGATAAACC TGATGAGACG TCTATTGATT GCCCACAGTG TGGTCAAGGG AAACTGTTAC AACGTAAGTC TCGGTTTGGG AAAGTTTTTC ATGCCTGTAA TCGCTACCCC GACTGTCAAT TTACGCTCAA CCAACCGCCA ATTGCAGGAA AGTGTGGTTA TTGCCACTAC CCACTGTTAA TAGAAAAAAG AACGGCACGG GGTATCAAAC GTATCTGTGC CAGTAAGTTA TGTGGGAAGG CTGTAGCCAG TGAGTCATAG
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Protein sequence | MTKKVITKDN GSCPECGSAL VIRSGGHGPF LGCSHYPDCQ YIRPLKAQAD GHVVKTLEGQ PCPECGSDMV LRQGRFGMFI GCSQYPQCDH TEVIDKPDET SIDCPQCGQG KLLQRKSRFG KVFHACNRYP DCQFTLNQPP IAGKCGYCHY PLLIEKRTAR GIKRICASKL CGKAVASES
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