| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0316 |
|---|
| Symbol | def |
|---|
| ID | 6087138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 338633 |
|---|
| End bp | 339145 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641595376 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001719082 |
|---|
| Protein GI | 170022577 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTAT TACAAGTATT ACATTACCCA GACGAACGGC TGCGCAAAAT TGCAGCGCCG
GTAAAAGAAG TTAATGGTGA AATCCAGCGT ATTGTGGACG ACATGTTCGA GACTATGTAC
GCAGAGGAAG GCATTGGGCT TGCCGCAACC CAAGTGGATG TTCACCAACA AATTATTGTC
ATTGATATAT CGGAAAACCG TGATCAACGC CTGGTGTTGA TAAACCCAGA ACTTTTGGAA
AAAAGTGGTG AAACGGGTAT TGAAGAAGGC TGTTTATCCA TTCCTGAGCA ACGAGCACTC
GTCCCTCGGG CTGAAAAGGT CAAAATCAGG GCACTGGATC GAGATGGCAA GCCGTTTGAA
CTAGAAACTG ATGGTTTATT AGCTATTTGT ATCCAGCATG AAATGGATCA TTTGATTGGC
AAACTGTTTG TCGATTATCT GTCACCACTC AAGCGTCAGC GTATCCGCCA AAAGCTGGAG
AAAATGGCCA AGCTCAATGC CCGCGCCAAC TAA
|
|---|
| Protein sequence | MSVLQVLHYP DERLRKIAAP VKEVNGEIQR IVDDMFETMY AEEGIGLAAT QVDVHQQIIV
IDISENRDQR LVLINPELLE KSGETGIEEG CLSIPEQRAL VPRAEKVKIR ALDRDGKPFE
LETDGLLAIC IQHEMDHLIG KLFVDYLSPL KRQRIRQKLE KMAKLNARAN
|
|---|
| |