Gene YPK_0312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0312 
SymbolmscL 
ID6090293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp334294 
End bp334698 
Gene Length405 bp 
Protein Length134 aa 
Translation table11 
GC content42% 
IMG OID641595372 
Productlarge-conductance mechanosensitive channel 
Protein accessionYP_001719078 
Protein GI170022573 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1970] Large-conductance mechanosensitive channel 
TIGRFAM ID[TIGR00220] large conductance mechanosensitive channel protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.929299 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAT TTCGTGAATT TGCCATGCGT GGCAATGTGG TTGACTTAGC TGTTGGTGTG 
ATTATTGGTG CTGCATTCGG CAGAATTGTC TCTTCGCTCG TTGCCGATAT TATCATGCCA 
CCACTGGGGT TATTGCTAGG CGGGGTAGAT TTTAAACAAT TCCATTTTGT ATTACGAGCC 
GCTGAAGGGA CTATACCCGC GGTAGTAATG AATTATGGTA CATTTATTCA AAGCATTTTT 
GATTTTGTTA TTGTAGCCCT CGCTATATTC TCCGCTGTTA AGTTAATGAA TAAGCTACGC 
CGTGAAAAAG CGGAAGAAGA ACCTGCTACA CCGCCAGCAC CAACGACTGA AGAGATACTA 
TTAGCTGAGA TTCGCGATTT ATTAAAAGCG CAGCACACAA AATAG
 
Protein sequence
MKEFREFAMR GNVVDLAVGV IIGAAFGRIV SSLVADIIMP PLGLLLGGVD FKQFHFVLRA 
AEGTIPAVVM NYGTFIQSIF DFVIVALAIF SAVKLMNKLR REKAEEEPAT PPAPTTEEIL 
LAEIRDLLKA QHTK