| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0307 |
|---|
| Symbol | rpsD |
|---|
| ID | 6089859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 330959 |
|---|
| End bp | 331579 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641595367 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001719073 |
|---|
| Protein GI | 170022568 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000246284 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC TAAGCTCAAG CTGAGCCGTC GTGAGGGCAC AGACCTGTTT
CTTAAGTCTG GTGTTCGCGC GATTGACACC AAGTGTAAGA TTGAACAACC ACCTGGCCAG
CACGGTGCGC GTAAACCGCG TCTGTCTGAC TACGGTGTGC AGTTACGTGA GAAACAAAAA
GTTCGCCGTA TCTATGGTGT TCTAGAACGT CAATTCCGTA ACTACTATAA AGAAGCAGCA
CGTCTGAAAG GCAATACTGG TGCAAACCTG TTGCAATTGC TTGAAGGTCG TCTGGACAAT
GTAGTTTACC GTATGGGCTT TGGCGCAACT CGTGCTGAAT CACGTCAGCT GGTGAGTCAT
AAAGCTATCA TGGTAAATGG TCGCGTTGTT AACATCGCTT CTTATCAGGT ATCTCCGAAT
GACGTAGTCA GCATCCGTGA GAAAGCTAAA AAGCAGTCTC GTGTTAAGGC AGCTTTGGAG
CTGGCTGAAC AGCGTGAAAA GCCGACTTGG CTGGAAGTTG ATGCTGTCAA GATGGAAGGT
GTGTTCAAAC GTATTCCTGA ACGTACTGAT CTGTCCGCGG ACATTAACGA ACACCTGATC
GTCGAGCTTT ACTCCAAGTA A
|
|---|
| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIEQPPGQ HGARKPRLSD YGVQLREKQK
VRRIYGVLER QFRNYYKEAA RLKGNTGANL LQLLEGRLDN VVYRMGFGAT RAESRQLVSH
KAIMVNGRVV NIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAVKMEG
VFKRIPERTD LSADINEHLI VELYSK
|
|---|
| |