Gene YPK_0300 details

Gene Information

• Locus tag: YPK_0300
• Symbol: rpsE
• ID: 6090172
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 327406
• End bp: 327909
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641595360
• Product: 30S ribosomal protein S5
• Protein accession: YP_001719066
• Protein GI: 170022561
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000000391785
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCACA TCGAAAAACA AGCTGGCGAA CTGCAGGAAA AGCTGATCGC GGTAAACCGC 
GTATCTAAAA CCGTAAAAGG TGGCCGTATT TTCAGCTTTA CCGCACTGAC AGTAGTTGGT 
GATGGTAACG GTCGCGTTGG TTTTGGCTAC GGCAAAGCAC GCGAAGTTCC GGCAGCGATC 
CAAAAAGCGA TGGAAAAAGC CCGTCGCGCT ATGATTAACG TTGCTTTGAA TAACGGCACT 
CTGCAGCACC CAGTTAAAGG TGCTCACACG GGTTCTCGTG TATTCATGCA ACCAGCTTCT 
GAAGGTACCG GTATTATCGC CGGTGGTGCC ATGCGCGCCG TTTTAGAAGT TGCAGGGGTT 
CATAACGTAT TAGCTAAAGC TTATGGTTCT ACTAACCCGA TTAACGTGGT TCGTGCAACT 
ATTGCAGCTC TGGAAGATAT GAAATCCCCA GAAATGGTCG CTGCCAAGCG TGGTAAGTCC 
GTCGAAGAAA TTCTAGGGAA ATAA 

 

Protein sequence

MSHIEKQAGE LQEKLIAVNR VSKTVKGGRI FSFTALTVVG DGNGRVGFGY GKAREVPAAI 
QKAMEKARRA MINVALNNGT LQHPVKGAHT GSRVFMQPAS EGTGIIAGGA MRAVLEVAGV 
HNVLAKAYGS TNPINVVRAT IAALEDMKSP EMVAAKRGKS VEEILGK