Gene YPK_0235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0235 
Symbol 
ID6089907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp272900 
End bp275446 
Gene Length2547 bp 
Protein Length848 aa 
Translation table11 
GC content52% 
IMG OID641595295 
Productnitrite reductase (NAD(P)H), large subunit 
Protein accessionYP_001719001 
Protein GI170022496 
COG category[C] Energy production and conversion 
COG ID[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID[TIGR02374] nitrite reductase [NAD(P)H], large subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAAA TAAAAATTGC CATCATTGGC AACGGCATGG TCGGCCACCG CTTTATCGAA 
GACTTATTGG ATAAAGCGGA TAAGGACCAA TTTGATATAA CCGTATTTTG CGAAGAACCC
CGCATTGCTT ACGATCGTGT GCATCTTTCC TCTTACTTCT CTCATCATAC CGCAGAAGAA
CTGTCACTGG TTCGCGAAGG CTTTTATGAA AAACAGGGCG TGAAGGTGCT GGTGGGTGAA
CGCGCCATCA CGATCAACCG TGCTGAAAAA GTGATTCACT CCAACAGTGG CCGAAGCCTG
TATTACGACA AGTTGGTGAT GGCAACGGGT TCTTATCCGT GGATCCCACC TATTAAAGGT
AGCGAAGGGC AAGATTGCTT TGTTTACCGC ACCATTGAAG ACCTGAATGC CATTGAGGCC
TGTACCCGTC GCAGCAAACG TGGTGCCGTC ATTGGCGGTG GCCTATTAGG GCTGGAAGCC
GCAGGGGCAT TAAAGAGCCT CGGCGTTGAA ACCCATGTGA TTGAATTTGC TCCCGTCCTA
ATGGCTGAAC AGCTTGATCC GATGGGCGGT GACCAACTGC GTCAGAAAAT TGAACGCATG
GGGGTCAGAG TTCATACCGG TAAGAATACC CAAGAAATTG TACATTCCGG CCAAAATAGC
CGCAAAACCA TGTTGTTTGC TGATGGGACG CAGTTGGAAG TTGATTTTAT CGTCTTCTCC
ACCGGTATCC GTCCGCAGGA TAAACTGGCG AATCAATGTG GTTTAGCCAC TGCCCGCCGT
GGTGGTATTG CTATCAATGA TTATTGCCAG ACATCCGATC CTGATGTCTA CGCCATTGGC
GAGTGTGCGT CATGGCAGGA ACGAACTTTC GGGCTGGTCG CGCCGGGTTA TAAAATGGCG
CAGGTTGCCG CAGACCATCT GTTAGGCCGT GAGAATGCTT TCCTCGGTGC TGATATGAGC
GCCAAACTGA AGCTGCTGGG CGTGGATGTT GGCGGGATTG GTGATGCCCA TGGCCGTACT
GAAGGTGCAC GCAGCTACGT TTATCTGGAT GAAAGCAAAG AAATTTACAA GCGTTTGGTG
GTCAGTGCCG ATAACAAAAC CCTATTGGGT GCCGTACTGG TTGGCGATAC CACCGATTAC
GGTAATCTGC TGCAACTGGC GTTGAATAAC ATCACATTAC CGGAAAACCC AGACAGCCTG
ATCCTGCCCG CCCATACAGG TAATAAACCC ACCATCGGGG TGGATTCCCT GCCAGATAGC
GCCCAGATTT GCTCCTGCTT TGATGTGACC AAAGGCGACA TTATTCGGGC GATTGGACAG
GGCTGCCAGA CTGTCGCCGC GCTAAAATCC GCGACCAAAG CCGGGACCGG TTGTGGCGGC
TGTATTCCGC TGGTCACCCA AGTATTGAAT GCCGAATTAA GTAAGCAAGG CATTGAAGTT
AATAATCATT TATGTGAACA CTTCGCCTAT TCACGCCAAG AACTGTATCA CTTGATCCGC
GTTGAAGGGA TTAAGACGTT TACCGAATTA CGGGAAAAAT ACGGCAAGGG CTACGGTTGT
GAAGTCTGTA AACCGACGGT CGGTTCACTG CTGGCGTCGT GCTGGAATGA GTATGTGCTG
GAGCCACAGC ATACGCCGTT GCAGGATACC AATGATAACT TCCTCGGTAA TATTCAGAAA
GATGGCACCT ACTCGATTAT TCCTCGTTCA CCAGGCGGTG AAATCACACC GGATGGCCTG
CTCGTCGTTG GTCAGATCGC CAAAGAATAT AACCTGTATA CCAAACTGAC CGGTTCCCAA
CGGATAGGGA TGTTTGGCGC ACAAAAAGAT GACCTACCGG CTATCTGGGC ACGGTTGATT
GACGCGGGCT TTGAAACGGG TCATGCCTAC GCCAAAGCAC TGCGTATGGC AAAAACCTGT
GTTGGCAGTA CCTGGTGCCG CTTCGGTGTC GGGGATAGCG TTGGCTTTGG TGTGGCCTTG
GAACATCGCT ACAAAGGTAT CCGCGCACCG CACAAAATAA AATTTGGCAT CTCTGGTTGT
ACCCGTGAAT GCGCAGAAGC TCAGGGCAAA GACGTGGGGA TCATCGCCAC TGAAAATGGC
TGGAATCTGT ATGTCTGCGG CAACGGCGGC ATGAAACCGC GTCACGCGGA TTTACTGGCA
GCCGATTTGG ATGAAGAGAC GCTAATGCGC TATCTCGACC GCTTTATGAT GTTCTACATC
CGCACCGCCG ATAAACTACA ACGCACCTCC GTCTGGCTGG AAAGTTTGGA AGGGGGGATT
CGCTACCTAC AATCGGTGAT CCTTGAGGAC AAACTGGGCA TTAACGATCA ACTGGAAGCA
GAGATCGCCC GTCTGCGCGA CAAGGTCGCC TGCGAGTGGA AAGCCACTGT CGAGAACCCA
GCAGCACAAG TGCGTTTTGC TCACTTTATT AATAGCTCAC TGCGTGACCC GAATGTACAA
GTCGTGCGCG AACGAGAGCA ACACCGCCCG GCCCGCCCAG ATGAACGCAT CCCGGTCAGG
GTTTTGGAAC TGGAGGATAA CGCATGA
 
Protein sequence
MSKIKIAIIG NGMVGHRFIE DLLDKADKDQ FDITVFCEEP RIAYDRVHLS SYFSHHTAEE 
LSLVREGFYE KQGVKVLVGE RAITINRAEK VIHSNSGRSL YYDKLVMATG SYPWIPPIKG
SEGQDCFVYR TIEDLNAIEA CTRRSKRGAV IGGGLLGLEA AGALKSLGVE THVIEFAPVL
MAEQLDPMGG DQLRQKIERM GVRVHTGKNT QEIVHSGQNS RKTMLFADGT QLEVDFIVFS
TGIRPQDKLA NQCGLATARR GGIAINDYCQ TSDPDVYAIG ECASWQERTF GLVAPGYKMA
QVAADHLLGR ENAFLGADMS AKLKLLGVDV GGIGDAHGRT EGARSYVYLD ESKEIYKRLV
VSADNKTLLG AVLVGDTTDY GNLLQLALNN ITLPENPDSL ILPAHTGNKP TIGVDSLPDS
AQICSCFDVT KGDIIRAIGQ GCQTVAALKS ATKAGTGCGG CIPLVTQVLN AELSKQGIEV
NNHLCEHFAY SRQELYHLIR VEGIKTFTEL REKYGKGYGC EVCKPTVGSL LASCWNEYVL
EPQHTPLQDT NDNFLGNIQK DGTYSIIPRS PGGEITPDGL LVVGQIAKEY NLYTKLTGSQ
RIGMFGAQKD DLPAIWARLI DAGFETGHAY AKALRMAKTC VGSTWCRFGV GDSVGFGVAL
EHRYKGIRAP HKIKFGISGC TRECAEAQGK DVGIIATENG WNLYVCGNGG MKPRHADLLA
ADLDEETLMR YLDRFMMFYI RTADKLQRTS VWLESLEGGI RYLQSVILED KLGINDQLEA
EIARLRDKVA CEWKATVENP AAQVRFAHFI NSSLRDPNVQ VVREREQHRP ARPDERIPVR
VLELEDNA