| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0234 |
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| Symbol | nirD |
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| ID | 6090909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 272577 |
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| End bp | 272903 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641595294 |
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| Product | nitrite reductase small subunit |
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| Protein accession | YP_001719000 |
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| Protein GI | 170022495 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCAGT GGATCCCACT ATGCCCGTTA AATGACATCT TACCCGGCAG CGGTGTTTGT
GGCCTGATTA AGCAGCAGCA GGTCGCGGTC TTCCGCCCTT ATGCTGACGA ACAGGTTTTT
GCCATTAGCA ATATCGATCC TTTTGCACAA GCCAGTGTGC TATCGCGGGG ATTAATTGCA
GAACATCAAG GTGAGTTATG GGTCGCCAGC CCACTGAAAA AGCAGCACTT CCGTCTGCGC
GATGGCTTTT GTTTGGAAGA TGAAGATCGC TCCGTGACCC ATTATGACGT GCGAGTGCGC
GACGGTATGG TGCAAGTCAA CGCGTAA
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| Protein sequence | MSQWIPLCPL NDILPGSGVC GLIKQQQVAV FRPYADEQVF AISNIDPFAQ ASVLSRGLIA
EHQGELWVAS PLKKQHFRLR DGFCLEDEDR SVTHYDVRVR DGMVQVNA
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