Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0148 |
Symbol | |
ID | 6087128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 191322 |
End bp | 193310 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641595208 |
Product | glycogen debranching enzyme |
Protein accession | YP_001718914 |
Protein GI | 170022409 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGTAT TAACCCATGG ATCACCGACA CCTTCTGGCG CCTACTTTGA TGGGAAGGGC ATTAATTTCA CACTATTTTC AGCCCATGCT GAGCAGGTGA CGTTGTGTCT GTTTGATGAG CAGGGGCAAG AGCGGCAGAT AGCCATGCCT GCTCGTACCG GTGACATCTG GCATGGCTAT CTTCCCGGCG GCAAGCCGGG GCAACGCTAT GGTTACCGGG TCAGCGGGCC TTTCGACCCC AGTCGAGGTC ACCGTTTTAA CCCACATAAG TTGTTGATAG ACCCCCGAAC TCGTGCGTTA GAAGGCAAGG TTGGTGATGA TCCCCGTTTT ACCGGTGGCG TTAGCCAGCC CGATGTCCGC GACAGTGCGG CGGCGTTACC TAAATGTCTT GTGATACACG AGGAATATGA CTGGCAGGGG GATAAACCGC CCGCCATTCC TTGGGGTAAT ACCGTGATTT ATGAAGCCCA TGTCCGTGGT TTAACCCAAT TACATCCTGA TATTCCGCCA GAGCTGCGCG GTACCTATGC CGCCTTGGCA CACCCTGCTC TGATTGAACA TCTCAAAACA TTGGGGATTA CCACACTGGA GTTGCTGCCA GTGCAATTTC ATATTGATGA ACCCCGGCTA CAAAAAATGG GGCTGAGCAA TTACTGGGGC TATAACGTGT TAGCGCCCTT TGCGGTGGAT CCAGATTATG CCTCGGGCCG CGAGGGCATA TCACCGCTGA GAGAACTACG GGATGCGGTT AAAGCCCTGC ATAACGCGGG CATTGAAGTC ATTCTGGATG TGGTGTTCAA CCACAGCGCT GAGTTGGATG TCTTCGGCCC GACCTTGTGT CAGCGTGGTA TCGACAATGC CAGCTACTAC TGGCTGACCC CCGATGGTGA ATACGACAAC ATCACGGGCT GCGGCAATGC ACTACGCCTC AGTCATCCGT ATGTCACACA GTGGGTTATT GATTGCCTAA ATTATTGGCG CGATAGCTGC CATGTGGACG GCTTTCGTTT TGACTTAGGC ACGGTACTGG GCCGCACACC GGCGTTCGAT CAACATGCGC CTTTATTTGC CGCCTTGGCG GCCGATGAGC GGCTCAGTGC CTGCAAATTG ATTGCAGAAC CTTGGGATAT CGGTCTGGGC GGTTATCAAT TGGGGAACTT CCCCACCGGC TTTAGCGAAT GGAATGACCA GTACCGCGAT GCCATGCGCG GTTTCTGGCT ACGAGGGGAG GTGCCGCGCG GTACCTTTGC CCAGCATTTT GCTGCTTCAA GCCGCCTGTT TGAACAGCGA GGGCGCTTAC CCTCTGCCAG CATTAATCAA ATTACCGCCC ATGATGGTTT CACCTTGCTG GATTTGCTGT GTTTTAACCA AAAACATAAC CAAATGAATG GCGAAGAAAA TCGTGATGGC AGTGATAACA ACCATAGCAA TAATTTTGGT TGTGAAGGCT TGGTGGCTGA CGCGGCTATC TGGCAACGGC GTAAAGCCTG TCAGCGGGCG CTACTGACCA CCTTATTACT CTCGCAGGGA ACGCCGATGT TACTGGCCGG TGACGAACAG GGCCACAGCC AGCAAGGCAA CAACAATGCT TATTGTCAGA ACAACATCCT CACCTGGCTC GATTGGGGCA GTGCGGATCG TGCATTAATG ACGTTTACCG CTGACCTTAT CCGGCTGCGC CAGCAAATCC CAGCCCTGAC TCAGGACCAA TGGTGGCAGA GCGGCGATAG TAATGTGCAA TGGTTGGATA GTCAGGGACA GGCGCTGAGT GATGCTGCTT GGGAGCAAGG CTGCCAGCAG CAACTACAGA TTTTGTTATC TCAGCGCTGG TTGGTGCTCA TCAATGCCAC TGATCACGAG TGTGAAATGC ACTTACCTGA AGGGGAATGG GAGGGGATTC CTCCCTTTGG GGTGTCAGAC CATGCGGAGC GATTAACCAC ATGGCGCGGG TCCGCGCATA CCATTTGTGT GCTCATAAAG AGAGATTAA
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Protein sequence | MAVLTHGSPT PSGAYFDGKG INFTLFSAHA EQVTLCLFDE QGQERQIAMP ARTGDIWHGY LPGGKPGQRY GYRVSGPFDP SRGHRFNPHK LLIDPRTRAL EGKVGDDPRF TGGVSQPDVR DSAAALPKCL VIHEEYDWQG DKPPAIPWGN TVIYEAHVRG LTQLHPDIPP ELRGTYAALA HPALIEHLKT LGITTLELLP VQFHIDEPRL QKMGLSNYWG YNVLAPFAVD PDYASGREGI SPLRELRDAV KALHNAGIEV ILDVVFNHSA ELDVFGPTLC QRGIDNASYY WLTPDGEYDN ITGCGNALRL SHPYVTQWVI DCLNYWRDSC HVDGFRFDLG TVLGRTPAFD QHAPLFAALA ADERLSACKL IAEPWDIGLG GYQLGNFPTG FSEWNDQYRD AMRGFWLRGE VPRGTFAQHF AASSRLFEQR GRLPSASINQ ITAHDGFTLL DLLCFNQKHN QMNGEENRDG SDNNHSNNFG CEGLVADAAI WQRRKACQRA LLTTLLLSQG TPMLLAGDEQ GHSQQGNNNA YCQNNILTWL DWGSADRALM TFTADLIRLR QQIPALTQDQ WWQSGDSNVQ WLDSQGQALS DAAWEQGCQQ QLQILLSQRW LVLINATDHE CEMHLPEGEW EGIPPFGVSD HAERLTTWRG SAHTICVLIK RD
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