| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0090 |
|---|
| Symbol | |
|---|
| ID | 6090363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 105022 |
|---|
| End bp | 105924 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641595150 |
|---|
| Product | dipeptide transporter |
|---|
| Protein accession | YP_001718856 |
|---|
| Protein GI | 170022351 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.448882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAC TTATTGAGTC AGCAGTAAAA AGTGCGCCGA AGCCAATGAC GCCATTGCAG
GAATTTTGGC ACTATTTCAA GCGCAATAAA GGGGCCGTGA TCGGCTTGTT CTACATCATC
ATTATGCTGG TGGTTGCCGC AGGTGCGACT TGGTTGGCCC CGCATGGTCC GGCAGAGCAA
TTTCGTGATG CGTTATTGAA GCCACCGGTT TGGGAAGAGG GTGGAAGCTG GAAATTTATT
TTAGGCACGG ATGATGTTGG CCGTGATGTC CTCTCTCGCC TGATGTATGG CGCGCGCCTC
TCCCTGTTAG TCGGGTGTTT GGTGGTGGTG CTGTCATTGG TGATGGGCGT CATTTTTGGC
TTATTGGCAG GTTATTTTGG CGGGATCGTT GATGCCATCA TCATGCGTGT TGTTGATATC
ATGCTGGCGC TGCCAAGTCT GTTATTGGCC TTGGTTTTGG TTGCCGTGTT CGGGCCTTCT
ATCGTGAATG CCTCGTTGGC GCTGACGTTT GTGGCTTTGC CGCATTATGT GCGTCTGACG
CGGGCGGCGG TGCTGGTTGA GGTCAACCGA GATTACGTAA CGGCATCAAG AGTGGCCGGT
GCGGGTGCGA TGCGCCAAAT GTTCATCAAC ATTCTACCAA ATTGCCTGGC ACCGTTAATC
GTGCAGGCTT CTCTCGGCTT CTCTAACGCC ATTCTGGATA TGGCGGCTCT CGGCTTTCTC
GGCATGGGCG CACAACCGCC AACACCAGAG TGGGGCACTA TGCTCTCCGA CGTGTTGCAG
TTCGCGCAAA GTGCCTGGTG GGTTGTGACC TTCCCCGGTG TGGCGATCCT GCTAACAGTT
CTGGCGTTTA ACCTGATGGG GGACGGCCTG CGTGATGCTC TCGACCCCAA ACTCAAGCAG
TAA
|
|---|
| Protein sequence | MSQLIESAVK SAPKPMTPLQ EFWHYFKRNK GAVIGLFYII IMLVVAAGAT WLAPHGPAEQ
FRDALLKPPV WEEGGSWKFI LGTDDVGRDV LSRLMYGARL SLLVGCLVVV LSLVMGVIFG
LLAGYFGGIV DAIIMRVVDI MLALPSLLLA LVLVAVFGPS IVNASLALTF VALPHYVRLT
RAAVLVEVNR DYVTASRVAG AGAMRQMFIN ILPNCLAPLI VQASLGFSNA ILDMAALGFL
GMGAQPPTPE WGTMLSDVLQ FAQSAWWVVT FPGVAILLTV LAFNLMGDGL RDALDPKLKQ
|
|---|
| |