| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0043 |
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| Symbol | |
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| ID | 6091050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 47410 |
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| End bp | 49383 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641595102 |
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| Product | selenocysteinyl-tRNA-specific translation factor |
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| Protein accession | YP_001718810 |
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| Protein GI | 170022305 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTATTG TCACCGCAGG CCATGTCGAT CATGGCAAAA CCACACTTTT ACAGGCCATT
ACCGGGGTCA ATGCGGATCG GTTGCCGGAA GAGAAGCAGC GGGGGATGAC CATCGATCTG
GGCTATGCCT ACTGGCCACT TCCTGATGGC CGTATCATGG GTTTTATTGA CGTCCCCGGT
CATGAGAAGT TTTTGGCGAA CATGTTGGCG GGGGTGGGCG GTATTGATCA CGCTCTGTTG
GTGGTGGCCT GTGATGATGG CGTGATGGCG CAGACCCGTG AACATCTGGC GATTTTGCGG
CTGAGTGGTC GGCCAGCGCT AACGGTGGCA TTGACCAAAG CGGATCGGGT TGATGATGAG
CGCATTGCAC AGGTCCATCA GCAAATTTTG CAGGAGTTGG TGGCACAAGG CTGGTCAGCG
GAGCAGATCA GTCTGTTTGT CACGGCGGCC GTCACTGAGC GTGGTATCGG TGAGTTACGT
GAGCATCTGG CGCAATGTCA TCAGCAACGT GACCCGAAGG GCCGATTACA GCGGCGTTTT
CGTCTGGCCA TTGACCGGGT ATTCAGCGTA AAAGGGGCTG GCTTAGTGGT GACGGGGACC
GCGTTGGCGG GCCAGGTGGC GGTAGGCGAT ACCCTGTGGT TGACTGGCGG TGATTGCCCC
GTGCGGGTGC GAGGTATTCA TGCCCAGAAC CAACCGGCAC AGCAGGCGCA AGCCGGCCAG
CGCATTGCCC TGAATATCAG CGGTGATATC AGTAAGCAGC AAATCAACCG CGGTGATTGG
TTATTGGCGC AGCCACCGTT GCCACCGGTG GATCGGGTGC TGGTAACCGT TGATGCCGAT
ACGCCGTTAC AACACTGGCA GCCCTTACAT CTGTATCATG GGGCTCGCCA TATTACGGGC
CGTTTTTCAC TGCTAGGTCA CCAGCAGTTA ATTGACGACC AACAACCGTT AATTGACGAC
CAACAACCGT TAATCGGCCA TCAACAAATC ATAAATAATC AATCCACATC AGGCGGTCAT
TCCTCTCAGA TTCTGGCCGA GTTGCTGCTG GACAGCCCTC TGTGGCTGGT AGAAAACGAC
CGGGTGATCT TGCGTGATAT CGGGGCGAAG AAAACCTTGG GTGGCGCACG GGTGATTCAT
CTGGCGGTGC CATCACGTGG TAAACGGCAA CCGGCGTATC TGGCTTGGTT AACCGCACTG
GCCCAGGCGA CGAGTGACCG AGAGGTGTTG GATTTACATT TGGCGCAAGG GCCGGTCTCG
GTGCGCACAT TTAGTTGGGC GCGCCAGCTT ACTGACAATG AGATGGCGGC ATTACTGGCG
GCGACCGATA CTGTCGTCGC CGGGGACATT GCGCTATCAC ATTCTCACGC ACAGCAAGCG
CAACAGACCC TCTTACATGT ACTCGCCCTC TATCACCAAC AGCATGGCGA TCAGTTGGGG
TTAGGGCGGG CGCGTTTGCG ACGTATGGCT TTACCGACGC TGGACGAAGG GGTGGTATTC
CGTCTGATTG ATAACTTGCT GGCGGAGGGA GCGTTACACA ACACCCGTGG GTGGTTACAT
CTGCCAGAAC ATGGTTTAGC GTTTACTGAG CAAGAGCAGA TAGGGTGGCA ACAAGCGGCA
CCTTACTTTG TTGATGACCC TTGGTGGGTG CGTGACTTAG CGGCCGAGTT GCAAGCTGCA
GAGGGTGAAA TGCGCAGCCT ATTACGCAAA GCGGCGCAAC TGGGTTATAT CACTGCGGTT
GTGACGGATC GTTATTATCT GAGCCAACGC ATTGAGCAGC TTGCTGATTT GGTACGTGAG
TTAGATAGCC GCCAGGGGAG TGTCAGTGCC GCAGATTTCC GTGATCGACT CGGTATTGGT
CGCAAACTGG CGATCCAAAT TCTTGAATTC TTTGACCGCA GTGGTTTCAC CCGCCGCCGG
GGTAATGGCC ATATATTGCG AGATAGCGGC CTGTTTTCTG CGACAGGTTC TTGA
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| Protein sequence | MIIVTAGHVD HGKTTLLQAI TGVNADRLPE EKQRGMTIDL GYAYWPLPDG RIMGFIDVPG
HEKFLANMLA GVGGIDHALL VVACDDGVMA QTREHLAILR LSGRPALTVA LTKADRVDDE
RIAQVHQQIL QELVAQGWSA EQISLFVTAA VTERGIGELR EHLAQCHQQR DPKGRLQRRF
RLAIDRVFSV KGAGLVVTGT ALAGQVAVGD TLWLTGGDCP VRVRGIHAQN QPAQQAQAGQ
RIALNISGDI SKQQINRGDW LLAQPPLPPV DRVLVTVDAD TPLQHWQPLH LYHGARHITG
RFSLLGHQQL IDDQQPLIDD QQPLIGHQQI INNQSTSGGH SSQILAELLL DSPLWLVEND
RVILRDIGAK KTLGGARVIH LAVPSRGKRQ PAYLAWLTAL AQATSDREVL DLHLAQGPVS
VRTFSWARQL TDNEMAALLA ATDTVVAGDI ALSHSHAQQA QQTLLHVLAL YHQQHGDQLG
LGRARLRRMA LPTLDEGVVF RLIDNLLAEG ALHNTRGWLH LPEHGLAFTE QEQIGWQQAA
PYFVDDPWWV RDLAAELQAA EGEMRSLLRK AAQLGYITAV VTDRYYLSQR IEQLADLVRE
LDSRQGSVSA ADFRDRLGIG RKLAIQILEF FDRSGFTRRR GNGHILRDSG LFSATGS
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