| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_2116 |
|---|
| Symbol | |
|---|
| ID | 6025583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 2232599 |
|---|
| End bp | 2234845 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641594934 |
|---|
| Product | S-layer domain-containing protein |
|---|
| Protein accession | YP_001718235 |
|---|
| Protein GI | 169832253 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.344579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGAGCA AGGGGTTATT CTGTCTGATG GCGGCGGCGG TGTTCTTGTT GGCGTGCGGG
ACGGTCGCGG CGCAGGCGGA CGAAGGCTTC ACCGAATTCA AGGATACGCA GGGGTACTGG
GCGGCCGAGG CAATTGCCCG GGTCAACGCG CTGGGACTGG TGCGCGGCTA TCCCGACGGA
ACGTTTCTGC CGCGGAACGA GGTGAGCCGG CAGGAGCTGG TAGTGATGGT GGTGCGCACC
CTGGGGCTGG AGGACGAAGC GCAACGGCTG GACGTGAACG CCCTCCGGCT GACCCTGCCG
GCGGACGTCA GTTCCTGGGC CAAGGGGCCG GTGGCTTTGG CGGTGCAGAA GGGCTGGATC
AGCCAGACCG GCCTGGCGGA CGTGCCGTTT CGTGCCGCGG CCACGCGTTT GGACGTGGCC
GTCCTGGTGG CCTCGGCCCT GAAACTCTCG CCGGAGAACG CGCTGCTCAC CTTCGCCGAC
CTGCAGTCCA TTCCTGCGAA CTACCGGCCC TACGTGGCCG CCGTGGTGCG GGCGGGAATC
ATGACCGGGG TGCCGGGTAA CCGGTTCGAG CCGTGGCGGG GCGTGACCCG GGCCGAGATG
ACCGCGCTGA TGGCTAAGAT GCTGGATGCC GGCCTGGTGA ATCCCGTTCC GGGGCGGTAT
TTCACGGCCG AGCTGGTCAC GGCGGACAGC CGGCGGGTGG TGCTGCGCAC GGCCGCGGGC
AGCCGGACCT ATGACCTGGC CGCTTTCAAC CTGGTTTACA AGGGGGCCGA CAAGGTAGCG
GTCAGCACCT TGCGGGCCGG GGACAATGTG CGCGTGGTGT TGGACGCCGA CAACCGCTGC
CGGTTCCTGG CCTACACCGA AAGCGGCGTT GCCGGGACTC CTTCGGGCAC GCCTTCCGAG
ACGACGACCA CGTACCGGGG TACGGTGGAT GCGGTACGGC TCGGCACGCC CCCGACCCTG
GATCTGCGGC GGGATACCGG GGGGACCGTT TCCCTGCCGC TGCGCTCCGA CGTGCGCATC
ACCAGGCAGG GGACGGCGCA GGACCTCACG GCGCTCTACC GGGGGGCGGC GGTCGAAGTC
CGGGTGACGG CCGGGCAGGT GACCGAGATC ATCATTGGGG AGACCGCGTC GGCGCCGTCC
ACCGGGGACG TGAAAGCTTA CGTGATCAAC AACTACCCCG GGCTGAGCTA CTTCAGCGTC
CGCTACGACA ACGGCACCCG GGGCGAGGTG AACGTTTCCG CCGCCACCCG GTTTTACCGG
GGGACCCGGT CGGCCGATTA CAGCGTGATC AGCCGCGGGG CGCGGGTGGA GCTGATCCGC
TCCGGCGGCA ACGTTGTGGG TGTGCGGGTG CTGGATGAGG ACAGGAAGAT CTTCGGAGAA
GTGGTCACCG TCCGGGCCGC GGACATCACG GTGGAGGACG GGGACAAGCA CCAGGTGAGC
CTTAGCTTCG CGGCCGGCGT AACTGTGCGG GACGCCGACG GCAACCGGAT GGCGGTGGAG
GACATCAAGG CGGGGGACCG GGTGGCACTG CAGCTGGACG CCGCCGGCAA GGTGGCGGCG
GTGGCGCTGG ACCTCAGGCA GGGCGAGAAG GAAGGTATCG TCACCTACCT GCGGACGGCC
ACCGCACCGC GGATCACCAT CGAGGACAGC CGGGGGCGGA GCGAGACCTA CATGCTGGTC
GACGACGTGC AGGTGACCCG GGACGGCCTC ACCCGGCAGC TGCGGGACGT GGTCGAAGGC
GACCGGGTGC GCCTGGTGCT GAACCGGCAC GACGAGGTCA TCCAAATCGT CATCCTGGAG
AAGGACGTGG GCCGGCAGTA CCGGGGCAAG GTGACGGCGC TGAACCTGTC GCGGTATGAA
ATCACCATCG AGCGGGACGG CCGGAGCACC AAATACGAAC TGGACCGCAA CGTGAAAGCC
GAGCGCGACG GGCGCAGCCT GTACATCGAC GAGGTGCTGA TCGGCGCCGA GGTGGAACTG
GTGCTGACGG GGAGCCGGGT GACCACCGTC AAGGTGACCG AGGACAAAAA CATCCGGGTG
GAAGGCGAGA TCGTCCGGGT GGACCTGGAC CGGGAGCGCC TGACCATTGA GCAGGCCAGC
GGCGGGGTGT TCCGCTTCTT CTTCGAAAGC AACGCCGTGC TGCGGGACAG AGGCGGATCG
GCCCTGCGGC TGCGCGACCT GCGCGAGGGC TGGGAGGTGC GCCTGGAGTT GCGAAACGGC
GAGATCCGCC GCCTGGACGT GTTGTAA
|
|---|
| Protein sequence | MKSKGLFCLM AAAVFLLACG TVAAQADEGF TEFKDTQGYW AAEAIARVNA LGLVRGYPDG
TFLPRNEVSR QELVVMVVRT LGLEDEAQRL DVNALRLTLP ADVSSWAKGP VALAVQKGWI
SQTGLADVPF RAAATRLDVA VLVASALKLS PENALLTFAD LQSIPANYRP YVAAVVRAGI
MTGVPGNRFE PWRGVTRAEM TALMAKMLDA GLVNPVPGRY FTAELVTADS RRVVLRTAAG
SRTYDLAAFN LVYKGADKVA VSTLRAGDNV RVVLDADNRC RFLAYTESGV AGTPSGTPSE
TTTTYRGTVD AVRLGTPPTL DLRRDTGGTV SLPLRSDVRI TRQGTAQDLT ALYRGAAVEV
RVTAGQVTEI IIGETASAPS TGDVKAYVIN NYPGLSYFSV RYDNGTRGEV NVSAATRFYR
GTRSADYSVI SRGARVELIR SGGNVVGVRV LDEDRKIFGE VVTVRAADIT VEDGDKHQVS
LSFAAGVTVR DADGNRMAVE DIKAGDRVAL QLDAAGKVAA VALDLRQGEK EGIVTYLRTA
TAPRITIEDS RGRSETYMLV DDVQVTRDGL TRQLRDVVEG DRVRLVLNRH DEVIQIVILE
KDVGRQYRGK VTALNLSRYE ITIERDGRST KYELDRNVKA ERDGRSLYID EVLIGAEVEL
VLTGSRVTTV KVTEDKNIRV EGEIVRVDLD RERLTIEQAS GGVFRFFFES NAVLRDRGGS
ALRLRDLREG WEVRLELRNG EIRRLDVL
|
|---|
| |