| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_2100 |
|---|
| Symbol | |
|---|
| ID | 6026368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 2218489 |
|---|
| End bp | 2219628 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641594920 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001718221 |
|---|
| Protein GI | 169832239 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0493506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGGCGCA GGTGGTTGGT ACTGGTCGTG GTTCTGGGTT TGCTGTTCAC GCTGAACGGT
TGCGAACGGG CCGGGACCGA AGGGCAGGGG AAGGAAGGCG CTGCGGCGGT CCCGGTGTTT
GTGGCTCAGG CCGAAATGGG GCGCTTGAGC CGCGGTGACG TTTTGACCGG GAAGGTTGCT
CCCCGGACCG AGGTCAAACT TGTGCCCAAG ATGGCGGGCA AGGTGGCGGC GGTGACCGTG
GACGTGGGCG ACCGGGTCCG CGCCGGGCAA ACCGTGGTAC TGCTCGACGC CGTGGAACTG
AGGGCGCAGC TCACCCAGGC CGAAGCCGGG GTGGCGGCGG CCGAGTCGGG GCTTTTTCAG
GCTGAACTGG CTTTTAAGCA GGCCCAAGCC GACTATGAGC GAATGAAATT CCTCCACGAC
CAGGGCGCGA TTCCGGATGC CGACTTCGAG AAAGCGGAAC TGAACTTCAA GCTGGCCCGG
GACCGGGCCG AAAACCTGGC CCCCGCCCAA CTGCAGCAGG CCCGCGGCCA ACTGGAATTC
GTGCGGGCGA ACTACAACAA TGCCACCCTG ACCTCCCCCG TATCCGGCCT CGTGGCCGCC
CGGAACGTGA ACCCCGGCGA GATGGCCTCG CCCGGCGTGC CGGTACTCAC CCTGATCGAC
ATCGACCTCG TCCGGGTGGA GGTTAACGCC TCCGAAAAAC TGGTGAACCA AATCAAGGTC
GGCCAAGAAG TCCGGGTGCG GGTCGCGGCG GCTTCCGCCG AGCCGCTGAC CGGTAAAGTG
GTCAGCATCG CCCCGGCGGC CGACGCGCGC GCCCGGACCT ACCCGGTGAA GGTGGAGCTG
CCCAATCCCG GCCACCTGTT GAAGGCGGGG ATGTTCGCCG AGGTGGACTT TGGGACCGAG
GCGGACAAGA ACGTGCTGGT GCCCCGAGAC GCCGTGTTCC AGCGGTCCGG CGCCCACTTC
GTGTTTGTGC ACGCCGGGGG CCGGATCGAA CTGCGCGAGG TTGTGCCCGG CCCGTCCGAC
GGGCGTATGG TGGCCGTGCT CAAAGGGCTG GAGGCCGGGG AAGACGTGGT GGTTTCCGGG
CAGGAAGCCC TGGAGGACGG GATGAAAGTG CAAGCATCGC GACTGGAGGC TAAGCAATGA
|
|---|
| Protein sequence | MGRRWLVLVV VLGLLFTLNG CERAGTEGQG KEGAAAVPVF VAQAEMGRLS RGDVLTGKVA
PRTEVKLVPK MAGKVAAVTV DVGDRVRAGQ TVVLLDAVEL RAQLTQAEAG VAAAESGLFQ
AELAFKQAQA DYERMKFLHD QGAIPDADFE KAELNFKLAR DRAENLAPAQ LQQARGQLEF
VRANYNNATL TSPVSGLVAA RNVNPGEMAS PGVPVLTLID IDLVRVEVNA SEKLVNQIKV
GQEVRVRVAA ASAEPLTGKV VSIAPAADAR ARTYPVKVEL PNPGHLLKAG MFAEVDFGTE
ADKNVLVPRD AVFQRSGAHF VFVHAGGRIE LREVVPGPSD GRMVAVLKGL EAGEDVVVSG
QEALEDGMKV QASRLEAKQ
|
|---|
| |