| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1869 |
|---|
| Symbol | |
|---|
| ID | 6025593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1968896 |
|---|
| End bp | 1969615 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641594687 |
|---|
| Product | cell wall hydrolase/autolysin |
|---|
| Protein accession | YP_001717994 |
|---|
| Protein GI | 169832012 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000539921 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAT GTTCCATATA CTGTCGCCAG GGGGGATTCC ATAATGCTGG TATTTATCGA
TCCGGGCACG GGGGCGAGGA GCCGGATGCC GTTTCCGGGG ATCTCCTGGA AAAACACCTG
AACCTGCAGA TCACTCTTGA ACTGAACACC GCCTTGCGGT GCAACTACCT GGTGGACACG
GTCCTGACCC GTACCGTGGA CACCACGGTG TCTCTCTACG ACCGGGTTCG CCGGGCGAAC
GCCGCCTGCG CCGATCTTTT TGTGTCGGTA CACGTGAACG CCGGGGGAGG AACCGGTTTC
GAGAGTTTCA TTCACCCCCA GGCGCCGGAG AAAACCCGCG GCATACGGCG GGCAATCCAC
ACGGAGGCGA TGAGTTTTCT CCGCATCCAC AGTGTCACTG ACCGGGGGAT GAAGACGGCC
GGCTTCTACG TATTACGCGC GACAAGTATG CCCGCGGTTT TGCTGGAGAC CTTGTTTATC
GACCACCCTG TGGACGCGCA ACGCCTCCGC GACCGGGTTT TCATTGCCCG GTACGCCCAC
GCGGTGGCCC GGGGTGTGGG CAAGGCCTTG CAGCTGCCGG CCCGGGATCC ATTCCGGGAC
GCGGAGAAGG ATGCCCTGAT TCTGGTACTG GAGACCGAGG TCCAAAGGCT GCAGGGCGAG
GTGGACCGGT TGCGGGGTGC TTTGAGGCGG ATTCACAACA CCGCCCTGGA GGTGCTTTAG
|
|---|
| Protein sequence | MDRCSIYCRQ GGFHNAGIYR SGHGGEEPDA VSGDLLEKHL NLQITLELNT ALRCNYLVDT
VLTRTVDTTV SLYDRVRRAN AACADLFVSV HVNAGGGTGF ESFIHPQAPE KTRGIRRAIH
TEAMSFLRIH SVTDRGMKTA GFYVLRATSM PAVLLETLFI DHPVDAQRLR DRVFIARYAH
AVARGVGKAL QLPARDPFRD AEKDALILVL ETEVQRLQGE VDRLRGALRR IHNTALEVL
|
|---|
| |