| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1817 |
|---|
| Symbol | |
|---|
| ID | 6026672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1921461 |
|---|
| End bp | 1922255 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641594634 |
|---|
| Product | CRISPR-associated Cas family protein |
|---|
| Protein accession | YP_001717945 |
|---|
| Protein GI | 169831963 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.536762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTCA CTATCTTCTT TAGCGCTCCC GGGCCGGTGG CCATACCCGT CCAGTACGGG
CACTTGCTCC AGGGGTTGAT CTACCGCCGG ATGGATAATC CGGTACTCAG GAGCTACCTG
CACGAGCATG GCTTTGCCCT GGAGAAGCGC CGCTTTAAGC TTTTCACTTT TTCTCGCCTG
ATGGGACAGG CGGTGACCTA CGACCAGGCG GCTGGACGGC TGGTGCTTAC GCCGCCGTTG
CGACTGGTGA TCTGTTCCCC CATCCCTTTC ATCCTCCAGG AGCTGGGAAC CGGTTTTCTC
CGCCAGGGCC GGGTCCGTCT GGGCGATGCC CACCTGGAGG TGAAGAAGAT GGCGACGGCA
GCCCCGTGGG TAACACGGGA GACCCTTCAG GTGCGGATGC TTTCCCCGCT GGTTGTTTAC
AGTACCCTTT CCGGCGTTGA CGGGCGGAAC TACACGTATT ATTATTCGCC CTTTGAGCCG
CGCTTCACCG AGCTGGTGGC AAGCAACCTT GCAAAAAAGC ACTTTTTGGT CTACGGGCAG
CCGGCGCGGG CGGAGGGCTT CGCCATCCGG CCGGTGCGGG TGGAAGACCG GGACCTGAAG
GTTACTTACT ATAAAGATAC TGTCATCAAA GGTTGGATGG GGGAGTACGA ACTTTCAGGC
GATCTGGAGC TTTTGCAGCT GGCCCTGGAC GCAGGTCTGG GGTCGAAAAA TTCCCAGGGT
TATGGGTGCT GCAACCTGGT AGAAAAGGCT TCTCAAGTTA GTAGTCGCTA TAGGCGGAAT
AGTAATATTA TGTAA
|
|---|
| Protein sequence | MQLTIFFSAP GPVAIPVQYG HLLQGLIYRR MDNPVLRSYL HEHGFALEKR RFKLFTFSRL
MGQAVTYDQA AGRLVLTPPL RLVICSPIPF ILQELGTGFL RQGRVRLGDA HLEVKKMATA
APWVTRETLQ VRMLSPLVVY STLSGVDGRN YTYYYSPFEP RFTELVASNL AKKHFLVYGQ
PARAEGFAIR PVRVEDRDLK VTYYKDTVIK GWMGEYELSG DLELLQLALD AGLGSKNSQG
YGCCNLVEKA SQVSSRYRRN SNIM
|
|---|
| |