| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1617 |
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| Symbol | |
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| ID | 6025652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | - |
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| Start bp | 1703835 |
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| End bp | 1705853 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641594440 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001717751 |
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| Protein GI | 169831769 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.755766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCCGG AGGAAGCGCG GGCGCGGGCC GAAGAGCTCC GCCGCGAGAT CGAGTATCAT
GATCACCGGT ACTACGTCCT GGATGACCCG GTGATCGAGG ACGCGGAGTA CGACCGCTTG
GTGCGGGAGC TGGTGGCTCT GGAGACGGCC TATCCTGAAC TGGTGACGCC CGATTCCCCC
ACGCAGCGGG TGGGCGGGCG GCCGCGCGAG GGCTTCGTGA CCGTCCAGCA CCGGGCGCCG
ATGCTCAGCC TTGCGAATGC CTTTAACGCG GCGGACCTCG CCGATTTCGA CCGGCGGGTG
CGCACCGGCC TGGCTGATGA GGACGTCGAC TACGTGGTTG AACTGAAGTT CGACGGTGTT
GCCGTTTCCC TGACCTATGA GCACGGCCGC CTGGTCCGGG GAGCCACCCG GGGAGACGGG
GTGACCGGCG AGGAGATCAC CCCCAATTTG CGGACCATCC GGTCCATCCC CCTACGCCTG
CGCCAGCCCG GGGCCCCGAA CGTGATCGAG GTGCGGGGCG AGGTGTACAT GCCCAAGGAA
GCGTTCGCCC GCCTGAATGA ACGTCGGGAG GACGCCGGGC TGCCCCTTTT CGCGAACCCG
CGCAACGCGG CGGCCGGCAG CTTGCGCCAA CTCGACCCCG GGATTACGGC GGAGCGGAAA
CTCGATATCT GGCTCTACGG GATCGGGTAC ACGGACGGCA TCGTTTTCGG CCGGCACAGT
GAAGCCCTAG CCTGGCTCGG CGAACAGGGT TTCCGGGTGA ACCCGCACAC CCGCATCTTC
TCGACCCTGG AAGAGGTTGA ACGGCACCTG GAGCACTGGC GGGAAGCGCG GTTTGAACTG
CCCTACGTGA TCGACGGCCT GGTGCTGAAG GTGGACCGGC TTGACCAGCA GGAACGGCTG
GGCACAACCC TGAAGAGCCC CCGCTGGGCG GTCGCCTACA AGTACCCGCC TGAGCAGGCG
GAGACGACCG TGGAGGACAT CATCATCCGG GTCGGGCGCA CCGGCGTCCT GACGCCGACC
GCCGTGCTGA GCCCGGTGCG ATTGGCTGGA ACGACGGTCA GCCGGGCATC CCTGCACAAC
GAGGACCTGA TCCGCGAAAA GGACATCCGG ATCGGGGACG TGGTGTTGAT TCACAAGGCC
GGGGACATCA TCCCCGAGAT CCTCGGTTCC AGACCCGAAA AACGCACCGG GCGCGAAACT
CCTTTCGCCA TGCCCGTACA ATGCCCGGAG TGTGCTTCAC TCCTGGTCCG CCCGGAAGGG
GAGGTCGGGG TCTACTGTTC CAACGTTGCC TGCCCCGCGC GGCTTGAGCG AAGCCTGCTG
CATTTTGTTT CCCGGAACGC TTTTGCTATC AACGGCCTGG GGCCAGCCGT GATTCAGCAG
TTGTTGGAGC GCCGCCTGGT GGCGGACCCG GCCGATCTCT TTACCCTGAC CCGCGAAGAA
CTGGTCGGCC TGGAAAGGAT TGGACCGAAG TCGGCCGACA ATCTCTTAAA GGCGATTCAG
AACAGCAAGC GCAACTCCCT GGCCCGGCTG ATCTTCTCAC TCGGCATCAG GCACGTCGGT
GAGCGGGCCG CGCGGCTTCT GGCCGAGCGC TTCGGTTCCC TGGCCGGGTT GATGGCCGCC
GGCCGGGAGG AACTCGAGGC GGTGCCCGAA ATCGGGCCGA AGATCGCGGA CAGCGTGTTG
AATTTTTTTG CCCGCGAGCA GAACCGCCGG GTGGTGGCCA AGCTGGTGCG GGCCGGCGTG
AATACGGTGG CAGACAGGCC GGCCGCCGCC GGTACCGGGC CGCTGGCGGG CAAGACCTTT
GTTCTGACGG GCACTCTGGA AGAGTTCTCC CGGGCGGAGG CCGCCGCCCG CATCGAGGAA
CTCGGCGGCC GGGTGGTTTC CAATGTCAGC CGCCGGACCG ACTACGTGGT CCTGGGCAAG
AATCCGGGCG GGAAATACGA CAAAGCCGTA AAGCTCGGGG TCAATATTAT TGAAGAGCCG
GAATTCAAGC GCCTGCTCTC CGGTATCCAA TCATATTAA
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| Protein sequence | MKPEEARARA EELRREIEYH DHRYYVLDDP VIEDAEYDRL VRELVALETA YPELVTPDSP
TQRVGGRPRE GFVTVQHRAP MLSLANAFNA ADLADFDRRV RTGLADEDVD YVVELKFDGV
AVSLTYEHGR LVRGATRGDG VTGEEITPNL RTIRSIPLRL RQPGAPNVIE VRGEVYMPKE
AFARLNERRE DAGLPLFANP RNAAAGSLRQ LDPGITAERK LDIWLYGIGY TDGIVFGRHS
EALAWLGEQG FRVNPHTRIF STLEEVERHL EHWREARFEL PYVIDGLVLK VDRLDQQERL
GTTLKSPRWA VAYKYPPEQA ETTVEDIIIR VGRTGVLTPT AVLSPVRLAG TTVSRASLHN
EDLIREKDIR IGDVVLIHKA GDIIPEILGS RPEKRTGRET PFAMPVQCPE CASLLVRPEG
EVGVYCSNVA CPARLERSLL HFVSRNAFAI NGLGPAVIQQ LLERRLVADP ADLFTLTREE
LVGLERIGPK SADNLLKAIQ NSKRNSLARL IFSLGIRHVG ERAARLLAER FGSLAGLMAA
GREELEAVPE IGPKIADSVL NFFAREQNRR VVAKLVRAGV NTVADRPAAA GTGPLAGKTF
VLTGTLEEFS RAEAAARIEE LGGRVVSNVS RRTDYVVLGK NPGGKYDKAV KLGVNIIEEP
EFKRLLSGIQ SY
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