Gene Daud_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1603 
Symbol 
ID6025960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp1691219 
End bp1692397 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content66% 
IMG OID641594426 
ProductLL-diaminopimelate aminotransferase 
Protein accessionYP_001717737 
Protein GI169831755 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID[TIGR03540] LL-diaminopimelate aminotransferase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0791506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTTTTG TGGAGGCCAA GCGGATCCGG AATCTGCCGC CCTACCTTTT CGCCCGGATC 
GAACAGTTGA TCGCCGACAA AAAGGCCCAG GGAGTGGATG TGATCAGCCT CGGAATCGGT
GACCCCGACG TGCCGACTCC GGACCACATT ATCGAGGCGG CGGAGAAAGA ACTGAAAATC
CCGGCAAACC ACCAGTACCC GAGTTCAGCC GGCATGCCCG CCTACCGGCG GGCGGTGGCG
GACTGGTACG CGCGCCGTTT CGGGGTCGAA CTCGATCCCC AGCGGGAGGT GGTCTCCCTG
ATCGGCTCGA AAGAGGGAAT CGCACACTTG CCCTGGTGCT TCGTGGACCC CGGGGATGTC
GTGCTGGTGC CCGATCCGGG TTACCCGGTC TACGCCGGTG GTACCATCCT GGCCGGCGGG
ATACCCCACC CGGTGCCGCT GACCGCCGGG AACGGTTTCC TGCCCGACTT GGCGGCGATT
CCCGCGGAAA CCGCGCGCCG GGCCAAAGTG ATGTTCATCA ACTACCCGAA CAACCCCACC
GGGGCGGTCG CCTCGAAGGA GTTTTTCGCC CGGGTGGTGG ACTTCGCCCG GGAATACGGC
ATCCTGGTGT GCCACGACGC CGCCTACTCG GAGATCGCCT TCGACGGGTA CCGGCCGCCC
AGTTTCCTGG AAGTCGCGGG GGCCCGGGAA GTGGGGATTG AGTTCCACTC GGTTTCCAAG
ACCTACAACA TGACCGGCTG GCGGGCCGGG TGGGCGGCCG GGAACGCCGG TGCCGTGGAG
GCCCTCGGCC GGCTGAAGTC CAACCTGGAC TCCGGGGTCT TCCAGGTGGT GCAGTACGCG
GCCATCGCCG CGCTGAACGG GCCGCAGGAC GGAGTGCAGT CCCTCTGCGA AATGTACCGG
GAGCGGCGTG ACCTGGTGGT GGACACGTTA AACGACCTGG GTTGGCGATT GACGAGGCCC
CGGGCGACCT TTTACATTTG GGCGCCGGTA CCGGCCGGGC ACGACGCGTC GTCGTTCGCC
GAAATGGTCC TGGAAAAAGC GGGAGTGGTT ATCACCCCCG GCACCGGCTA CGGTACGTAC
GGAGAAGGCT ACTTCCGGAT TTCTCTGACG CTCCCGACTC CCCGGCTGGT GGAGGCGATG
GAGCGGCTGC GCGGGTGCCT GGGCCGGGTT ACCTTTTAG
 
Protein sequence
MSFVEAKRIR NLPPYLFARI EQLIADKKAQ GVDVISLGIG DPDVPTPDHI IEAAEKELKI 
PANHQYPSSA GMPAYRRAVA DWYARRFGVE LDPQREVVSL IGSKEGIAHL PWCFVDPGDV
VLVPDPGYPV YAGGTILAGG IPHPVPLTAG NGFLPDLAAI PAETARRAKV MFINYPNNPT
GAVASKEFFA RVVDFAREYG ILVCHDAAYS EIAFDGYRPP SFLEVAGARE VGIEFHSVSK
TYNMTGWRAG WAAGNAGAVE ALGRLKSNLD SGVFQVVQYA AIAALNGPQD GVQSLCEMYR
ERRDLVVDTL NDLGWRLTRP RATFYIWAPV PAGHDASSFA EMVLEKAGVV ITPGTGYGTY
GEGYFRISLT LPTPRLVEAM ERLRGCLGRV TF