Gene Daud_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1196 
Symbol 
ID6026613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp1250561 
End bp1251277 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content67% 
IMG OID641594011 
Productpseudouridine synthase 
Protein accessionYP_001717339 
Protein GI169831357 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.939109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGACTGC AGAAGTACCT GGCGGAGGCC GGCATCGCTT CGCGCCGTGC TAGCGAGGAG 
TTGATCCTTG CCGGGCGGGT GCGGGTTAAC GGTGAGGTGG TTCGCGAACT CGGCACCACG
GTCGATTCCT CCCGGGACCG CGTGGAGGTT GACGGCCAAA AAATCCGGCC CGAGCCCAAG
ATTTACGTTT TGTTGTACAA GCCCCGCGGC TACGTGACCA CGGCCCGGGA CCCCCAGGGA
AGGCGCAAGG TGACCGACCT GGTGGCGGGT GCGGGCGGCC GGGTTTTCCC GGTCGGACGC
CTGGACTACG ACAGCGAGGG CCTACTGTTG CTCACCAACG ACGGCGAACT GGCCTACCGT
CTGACCCATC CCCGTTTCCA CGTCCCGAAG ACCTACCACG TGGTGCTGGA TCGCTCACCT
GGGCCGGCGG CGTTGCGCGC CATCGCCCGC GGCGTTGAAC TGGACGACGG CCTGACAGCG
CCGGCGGGAG TCCGCCTGGT GCGCCGGGAC GGCAGGGAGG CTCTGGTGGA GATGACCATC
CACGAGGGCC GGAAACGCCA GGTGCGGCGG ATGTGGGCCG CCCTGGGATT TGAAGTGCAA
AGGTTGAAGC GCGTCCGGAT GGCGGGCCTT GAACTGGGCG GCCTGGAACC CGGCCGCTGG
CGGCACCTGC GAACGACCGA AGTGCGGGAG TTGAGGAAAC TGGTGCGGTT ACCGTAA
 
Protein sequence
MRLQKYLAEA GIASRRASEE LILAGRVRVN GEVVRELGTT VDSSRDRVEV DGQKIRPEPK 
IYVLLYKPRG YVTTARDPQG RRKVTDLVAG AGGRVFPVGR LDYDSEGLLL LTNDGELAYR
LTHPRFHVPK TYHVVLDRSP GPAALRAIAR GVELDDGLTA PAGVRLVRRD GREALVEMTI
HEGRKRQVRR MWAALGFEVQ RLKRVRMAGL ELGGLEPGRW RHLRTTEVRE LRKLVRLP