| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0987 |
|---|
| Symbol | |
|---|
| ID | 6027110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 1041780 |
|---|
| End bp | 1042649 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641593799 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001717131 |
|---|
| Protein GI | 169831149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACG CTAGCACCCG GCTGGTGGTC CTACTGGGTT ACCCGGTGCA CCACAGCTAT
TCCCCCGCGA TGCAGAACGC CGCCTTTCGG GCGGCGGGCC TGAATCTGGT GTACCTGGCC
GCTCCGGTGC CGCCTGAACG ATTGGCGCCG GCGGTGGCGG CGGTGGCAGC GCTGGACATG
CCGGGGGCGA ATGTGACCGT GCCGCACAAG GAACGGGTGC CGGCCTTCCT GGACGAAGTC
GCCCCGGAGG CCCGGCTGCT CGGGGCCGTG AATACCATTG TGCACCGCAA CGGCCGCCTG
GTTGGCCACA ACACCGACGG GACCGGTTTC TTGCGCGCGC TCCGGGAGGC CGGATACGAC
CCCCGGGGAG AAGCGGTCGT AGTCTTGGGC GCGGGGGGGG CGGCGCGCGC CGTGGCGGTC
ACCCTAGCCC TGGAGGGCGC GAAAGAGATC GTTGTTTTCA ACCGCACGTT GGACCGCGCG
CATCAGTTAG CCGCGCTGGT CCGGGAGCGG GGGTGCGGGG GGGCGGCGGC CCTGGGCTGG
GAGGCGCTGG AGGGGCAAAC CCCCGAAGCG CGAGCCGCCT TCGTCCGGGC GGGGCTGGTC
GTGCAGACCA CCTCTTTGGG GATGTCCCCG CGGCTGGAGG ACGGTCCGCC CGTTCCGCCG
GAATGGATGT CCGCCAATCA TCTGGCGTAC GACCTGGTGT ACAACCCGTC GGATACCGCC
TTCCTGAGGA TGGCCCGGAA GGCCGGGGCC CGGACCGCCG GCGGGGCCGG GATGCTGTTG
CACCAGGGTG CCGCAGCTTT CGAACTCTGG ACCGGGCGGG ACGCGCCGCT CGCGGCGATG
AAACAGGCCC TGGAGGCCTG CCTGGCATAA
|
|---|
| Protein sequence | MIDASTRLVV LLGYPVHHSY SPAMQNAAFR AAGLNLVYLA APVPPERLAP AVAAVAALDM
PGANVTVPHK ERVPAFLDEV APEARLLGAV NTIVHRNGRL VGHNTDGTGF LRALREAGYD
PRGEAVVVLG AGGAARAVAV TLALEGAKEI VVFNRTLDRA HQLAALVRER GCGGAAALGW
EALEGQTPEA RAAFVRAGLV VQTTSLGMSP RLEDGPPVPP EWMSANHLAY DLVYNPSDTA
FLRMARKAGA RTAGGAGMLL HQGAAAFELW TGRDAPLAAM KQALEACLA
|
|---|
| |