| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0968 |
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| Symbol | |
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| ID | 6026716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 1025042 |
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| End bp | 1026727 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641593780 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001717112 |
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| Protein GI | 169831130 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT
[TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.197479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGGAGG CAAAGACTTC CAAGAAGCAA CTCGGGGAAC AACTTATTGA AAGAGCTCTG
ATCACCAGGG AACAGCTCTG GGAAGCCCTG CGGATTCAGT CCAAGACCGG CGACAAGCTG
GGCGTCATTC TGGTCGGGAT GGGTTTGGTC TCCCAGGACG AGATCAACGA CATTCTGGGC
TTGGCTCCCA CCGTGTCCCT GGAGTCGATC GACCCTGATT TGCTGAAGAC TGTACCGGAA
CAACTTATCC GGAAATATAT GGCCATCCCG GTGAAGAAAG AAGGACGTAA ACTGACACTA
GCCTTGGCCG ACCCGACAAA CATCCTGGCG ATAGATGATT TCCGCCTGAT TCTGGGGTGC
GAGGTGGAAC CGGTGAAGAT GGCGCAGGAA GACATCGAGG CGGCGCTGCA GAAACACTTC
GGCATCCCGC AGTTTGACAA AGCTTTCGAG GAATTTGACC TGGAAGTGGC CGCGGAGGAG
GAAGAGCCGG AAGAGGAAAG CCTGGTCGAC GACGCCCCCG TGGTGCGGTT GGTGAATTCC
CTGTTCCTGC AAGCCATCGA AATGAAAGCC AGCGACATCC ATATCGAACC CCAGGAGACC
GGACTCCGGA TCAGGTACCG GGTGGACGGC CTGCTGCGGG AGGTCGCCCA CCTGCCCAAG
AAGATCCGCC CCGCCGTCAT CTCTCGTGTC AAGATTATGT CCGAAATGGA CATCGCCGAG
AAAAGGGTGC CCCAGGACGG CCGTATCCCA CTCAAGTTTG GGACCAAAGA GATCGACATG
CGTGTGTCAA CCCTGCCGAC GGCTTACGGA GAGAAAGTGG TCAGCCGCCT GCTGGACAAG
TCGGGTATGC AGAACTACCG AATCGAACAG CTCGGCTTTC ACCCGGACAA CCTCAGGAAG
TTCCAGTCGG CTCTTCGCAA TGCTTACGGG ATGTTGCTGA TCACCGGCCC CACGGGAAGC
GGCAAAACCA CCACCCTCTA TGCCGCCCTC AACCAACTGA ACACCCCGGA GAGGAATATC
ACCACGATTG AAGACCCGAT TGAGTACATG TTGCGGGGCA TCAACCAGAC ACAGGTGAAC
GTCAAGGCCG GAATGACCTT CGCCGCCGGG CTTCGCTCGA TTCTGCGGCA GGACCCGGAC
ATCGTGATGG TCGGAGAGAT CCGCGACCGG GAGACGGCTG ACATCGCCGT GCGGGCGGCG
GTAACCGGCC ACCTGGTGAT GTCAACGCTA CATACCAACG ACGCCGCCAG CGCGGTAAAC
CGCCTGGTGG ATATGGGCGT GGAGCCTTTT ATGGTCTCGG CCTCCCTGCT CGGGGTGGTG
GCCCAGCGTC TGGTGCGCCG CCTTTGCACA ACATGCAAGG AGGCCTACCC GCTGCCGGAG
CACGATCCGG TGCGCCAGTT CCTCGGCTGC GACTCTGCCG ATGCGGTGAC GCTCTACCGG
GGCCGGGGCT GTAACCGGTG CGGCCAATCC GGGTACCGGG GCCGGGTGGC TCTGCACGAG
GTGTTCATCG TCGGGTCCGA ACTCCGTCCC CTGATTTCGG CCAACGTGCC CGCCGACCAG
CTTAAGCAGA AAGCGGTTCA GCACGGGATG ATCACCTTGA AACAGGACGG AGTGTATAAG
GTGCTGGAGG GCCTGACCAC CGTGGACGAA GTTATGCGCG TGGCCTACAT CGGTGAGGAT
GAGTAG
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| Protein sequence | MAEAKTSKKQ LGEQLIERAL ITREQLWEAL RIQSKTGDKL GVILVGMGLV SQDEINDILG
LAPTVSLESI DPDLLKTVPE QLIRKYMAIP VKKEGRKLTL ALADPTNILA IDDFRLILGC
EVEPVKMAQE DIEAALQKHF GIPQFDKAFE EFDLEVAAEE EEPEEESLVD DAPVVRLVNS
LFLQAIEMKA SDIHIEPQET GLRIRYRVDG LLREVAHLPK KIRPAVISRV KIMSEMDIAE
KRVPQDGRIP LKFGTKEIDM RVSTLPTAYG EKVVSRLLDK SGMQNYRIEQ LGFHPDNLRK
FQSALRNAYG MLLITGPTGS GKTTTLYAAL NQLNTPERNI TTIEDPIEYM LRGINQTQVN
VKAGMTFAAG LRSILRQDPD IVMVGEIRDR ETADIAVRAA VTGHLVMSTL HTNDAASAVN
RLVDMGVEPF MVSASLLGVV AQRLVRRLCT TCKEAYPLPE HDPVRQFLGC DSADAVTLYR
GRGCNRCGQS GYRGRVALHE VFIVGSELRP LISANVPADQ LKQKAVQHGM ITLKQDGVYK
VLEGLTTVDE VMRVAYIGED E
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