| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0956 |
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| Symbol | |
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| ID | 6027213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 1014465 |
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| End bp | 1016150 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641593769 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001717101 |
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| Protein GI | 169831119 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAGC CGGGAGCGAA CCTTCTGGGG ATGAACCTGG TGAAGGCCGG GGTGATCACC
CAGGAACAAC TGGAGGAGGC CTTAAAACGG CAGGACCCGA AAAAAGGCGG GAAAGGGTTT
TTAGGGGCCA CCCTCGTGGA GCTGGGTTAC TGCACCGAAG AAGACATTGC CCAGGTCATC
GCCAGGCAAA ACGGCGTACC TTATGTTTCA CTGGAAACAT TCGCGGCCGA CCCCCAGGCC
GTGGGCCTGA TTGCGCCGGA GGTCGCCCGG CGCTACCGCG CCCTGCCCAT CGGGTTTCAA
AACGGCAAAT TGGTGGTGGC CATGAAGCAG CCCCGGGACG TGATCGCGCT GGATGACCTG
CGCATCATCA CCGGCCGGGA GATCCAACCG GTGGTCATTC CGGACAGCCA GTTCGACGCG
GCCATGCAGC GGTACAGCCA GAGCGGCCTG GAGGTCGAGC TGGCGGCTGC GGAAGAAGAA
GTCGCCGAAG AAGTGGTGGC CGGACTGGAC GAGGCTGCGC AGCGTCCGGC GGTGCAGCTG
GCCAACGCCA TCTTCAACCA GGCGGTCTGG GCTTCCGCCA GCGACGTGCA CATCGAACCC
CTGGAGAAAA GCCTGCGGGT GCGCTTTCGC ATCGACGGGG TGCTGCACAA CATCCTGCAG
CCCCCGCGCC ACCTACATGC ATCGCTGGTC TCGCGCATCA AGGTGATGGC CAACATGGAC
ATCGCCGAGC GCCGCGTCCC CCAGGACGGC CGCTTCACCC TGCGGGTGGA GGGGAAGACC
ATTGATGTGC GGGTCGCCTC GCTGCCCGGG AGCTACGGCG AAAAACTCAC TCTCCGCCTG
CTGGACCGCA GTGTCCGGCT GATATCCCTG GAGGAACTGG GCTTCCCGCC GGAGGTGCTG
GCCAACTACC GGAAGGTGAT GCGTCGCCCG TACGGCCTCA TCCTGGTGAC CGGCCCGACG
GGGAGCGGCA AGAGCACCAC GCTCTACGCC ACCCTGTCCG CCTTGAACAC GCCGGAGAAG
CACGTCGTCA CCGTGGAGGA CCCAGTCGAG TACCGCCTGG ACGGGGTCAA CCAGATCCAG
ATCAACCCCC GCGCCGGGCT GACCTTTGCC ACCGGACTGC GCTCCATCCT GCGCAACGAC
CCGGACATCA TCATGGTCGG GGAGATCCGC GACCGGGAGA CCGCCCGCAT CGCCGTGGAA
GCGGCGCTTA CCGGCCACCT GGTGCTGTCC ACCCTGCACA CCAACGACGC CGCCGGGGCG
GTCACCCGCC TGGGCGACAT GGGCATCGAG CCCTTCCTGA CCGCCTCCTC GCTGGTGGCC
GTCGTGGGCC AGCGTCTGGT GCGCGTCCTC TGCCCCCAGT GCGCGCAGTC CTACGAGCTG
GGGCGGGAAG AACTGCTGGC CGGCGTGCCC GACTTTCCCC TGGACGACGG GGAAAAGACC
ATCACCCTCT ACCGTCCGGG AGGGTGCCTG CGCTGCAGCC ACACCGGCTA CCGCGGTCGG
ATGGGAGTGT ACGAGCTGCT GCTGGTCAGC GAGACCATCC AGCGCCTTAC TCTGGAACGT
GCTCCGGCCC GGGAGATCAA GGAGGCCGCC GTGGCCGAGG GGATGGTCAC CTTCCGCCGC
GACGGCCTGC TGCGGGTGAA GCAGGGGATC ACCTCGCTGG AGGAGGTGAT GCGGGTCACG
GCTTAA
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| Protein sequence | MLKPGANLLG MNLVKAGVIT QEQLEEALKR QDPKKGGKGF LGATLVELGY CTEEDIAQVI
ARQNGVPYVS LETFAADPQA VGLIAPEVAR RYRALPIGFQ NGKLVVAMKQ PRDVIALDDL
RIITGREIQP VVIPDSQFDA AMQRYSQSGL EVELAAAEEE VAEEVVAGLD EAAQRPAVQL
ANAIFNQAVW ASASDVHIEP LEKSLRVRFR IDGVLHNILQ PPRHLHASLV SRIKVMANMD
IAERRVPQDG RFTLRVEGKT IDVRVASLPG SYGEKLTLRL LDRSVRLISL EELGFPPEVL
ANYRKVMRRP YGLILVTGPT GSGKSTTLYA TLSALNTPEK HVVTVEDPVE YRLDGVNQIQ
INPRAGLTFA TGLRSILRND PDIIMVGEIR DRETARIAVE AALTGHLVLS TLHTNDAAGA
VTRLGDMGIE PFLTASSLVA VVGQRLVRVL CPQCAQSYEL GREELLAGVP DFPLDDGEKT
ITLYRPGGCL RCSHTGYRGR MGVYELLLVS ETIQRLTLER APAREIKEAA VAEGMVTFRR
DGLLRVKQGI TSLEEVMRVT A
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