| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0934 |
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| Symbol | |
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| ID | 6027568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 992893 |
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| End bp | 995118 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641593746 |
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| Product | 3' exoribonuclease |
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| Protein accession | YP_001717079 |
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| Protein GI | 169831097 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00161965 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAGC AGGGTTATAT TACACGTACA ATTGAAATCA GCGGTCGGAC TTTCAGCGTG
GACATCGGCC GTGTGGCCGG GCAGGCCTCC GCTGGCGTCC TGGCCCGGTA CGGGGAAACG
GTGGTGCTGG TGGCGGCCAC CCGGGAGGCG CTCCGGGAAG GGTTGGATTT CTTCCCCCTG
ACCGTGGACT ATGAAGAACG GCATTACGCC GTCGGGCGGA TTCCCGGAAG CTTCATGAAG
CGTGAAGGCC GCCCCGGGGA AAAGGCCATT CTCGCCGCGC GGCTGATCGA CCGGTCGATC
AGGCCGCTCT TCCCGCGCAA CTTCACCCAG GATGTGCACG TGGTGGCGCT GGTGATGTCG
GTGGACCAGG ACTGCTCGCC GGCGATCACG GCGATCCTCG GTGCTTCGGT GGCGCTGACC
CTTTCGGACA TCCCCTTCGC CGGCCCGGTG GGAGCGGTGA TCATGGGGAT GGTTGACGGG
CAGTTGGTGG TCAACCCCAC GCTGGAGCAG GACGAGAAGT CGGACCTGCA CCTTACCGTC
GCGGGGACCC GGGAAGCGAT CAACATGGTG GAGGCGGGCG CCAAGGAGGT CTCCGAAGAA
ATAATAGTTG AGGCGCTCAC CAAGGCGCAC GCCGAGATCC AGCGGATCGC GGAGTGGGTC
GGAGAGATCC GGGCGGAAGT CGAACCCCTG GGTTTGGCCC ACCCGAAAAT TGAGGTGCCG
GCGAACGAAC CGGGTCCGGA ACTGGTGGAG GCGGTCCGAT CCGCCGGTTA CGAAAAGATG
CGGGCCGCCG TGCACCACTG CAAGAATGAG CGGCTCGACA AGAAGTCCGC CGACCGGCAC
CTGGAGGGGA CCAAAGCCGA AATCATCAAT GCCGTTCTGG AAAACTTCCC GGAAGAGGAA
CAGCGCCTGA AAAGCCTGGT CGACAAGCTG GAGAAAGAAG CCGTGCGGGA GTTGGTGCTG
AAGGAAAAGG TACGGCTGGA CGGCCGCGCC TTCGACGAAA TCAGGGACAT CAGCGTGGAG
GTCAACGTGC TGCCGCGCAC CCACGGTTCG GGGCTTTTCC AGCGCGGGCA GACCCAGGTC
CTTTCGGTCC TCACCCTCGG CGCGGTGCGG GACGAGCAGA TTCTGGACGG GCTGGACACC
CAGGAAACCA AGCGGTTCAT GCACCATTAC AACTTTCCGT CCTTCTCCAC CGGGGAGGCG
CGCCCCATCC GCTCGGCGGG CCGGCGCGAG ATCGGTCACG GCGCCCTGGC GGGGCGGGCC
CTGGAGGCGG TTCTGCCGGG AGAGGACGTT TTCCCGTATA CCATACGGAT CGTGTCCGAG
GTGCTGAGCT CCAACGGCTC AACCTCCATG GCCAGCGTCT GCGGCAGCTG CCTGGCCCTG
ATGGACGCGG GCGTGCCGAT CAAGGCTCCG GTGGCGGGGA TTGCGATGGG TCTGATCAAG
GAGGGCGACG AGGTCGCCGT CCTGACCGAT ATCCAGGGTA CGGAGGACCA CCTCGGGGAT
ATGGACTTCA AGGTGGCCGG CACCGAGCAG GGGGTCACCG CGCTCCAGAT GGACATCAAG
ATCGCCGGGA TCACCCCGGA AATTCTGGCT CAGGCGATGG CGCAGGCCCG GGAGGCCCGG
CTGTACATCC TGGACCGGTA TAAGGAGGTC ATCCCGGGAC CCAGACCGGA AATCTCCCCG
CGGGCGCCGC GGATCATCCA CACCACTATT GATCCGGAGA AGATCCGGGA CATTATCGGT
CCCGGCGGCA AGATCATCCG GAAGATCACG GAGACGACCG GGGTGGATAT CGACGTGGAA
GATGACGGGC GGGTGTTCAT CACCGCTCCT GACCCGGAGG GCGGCAAGAA GGCCCTGGAG
ATTATCAAAA CCCTTACCGC CGAAGTCAAA GTGGGTGAGG TGTACTTAGG CCGCGTGGTG
AAGATAATGG ACTTCGGGTG CTTTGTGGAG GTTATCCCGG GGGTGCTCGG GTTGCCCGGC
AAGGACGGAC TGGTTCATAT CTCGCACTTG GCCCACAACC GGGTGCGGAA AGTGGAAGAC
GTGGTCCGGG AAGGGGATCA GATACTGGTC AAGGCCATCG GTTTCGACAA TCAGGGCCGC
CTGAAACTGT CCAAAAAAGA AGCCATGGAG CCCCCCGCCG GCGGCGCCGG GGAGACCGGC
CGGCCGGGCC TGATACAGGA CGACCGCCCG GACCGGCGGC CGCGCTCGCG GTTTTCCCGG
AGATAA
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| Protein sequence | MTEQGYITRT IEISGRTFSV DIGRVAGQAS AGVLARYGET VVLVAATREA LREGLDFFPL
TVDYEERHYA VGRIPGSFMK REGRPGEKAI LAARLIDRSI RPLFPRNFTQ DVHVVALVMS
VDQDCSPAIT AILGASVALT LSDIPFAGPV GAVIMGMVDG QLVVNPTLEQ DEKSDLHLTV
AGTREAINMV EAGAKEVSEE IIVEALTKAH AEIQRIAEWV GEIRAEVEPL GLAHPKIEVP
ANEPGPELVE AVRSAGYEKM RAAVHHCKNE RLDKKSADRH LEGTKAEIIN AVLENFPEEE
QRLKSLVDKL EKEAVRELVL KEKVRLDGRA FDEIRDISVE VNVLPRTHGS GLFQRGQTQV
LSVLTLGAVR DEQILDGLDT QETKRFMHHY NFPSFSTGEA RPIRSAGRRE IGHGALAGRA
LEAVLPGEDV FPYTIRIVSE VLSSNGSTSM ASVCGSCLAL MDAGVPIKAP VAGIAMGLIK
EGDEVAVLTD IQGTEDHLGD MDFKVAGTEQ GVTALQMDIK IAGITPEILA QAMAQAREAR
LYILDRYKEV IPGPRPEISP RAPRIIHTTI DPEKIRDIIG PGGKIIRKIT ETTGVDIDVE
DDGRVFITAP DPEGGKKALE IIKTLTAEVK VGEVYLGRVV KIMDFGCFVE VIPGVLGLPG
KDGLVHISHL AHNRVRKVED VVREGDQILV KAIGFDNQGR LKLSKKEAME PPAGGAGETG
RPGLIQDDRP DRRPRSRFSR R
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